DC887343

Overview
NameDC887343
Unique NameDC887343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 58/220 (26.36%), Postives = 114/220 (51.82%), Query Frame = -2
Query:  148 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEA--------------GMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPCA 756
            F+ +SGS LV K++GEG ++V+  F++AR   PS++F+ ++D + S+++       +S V R   ELL QLDG  +S    + V+ +T++ + +D++L R     +++  P P+  +R  I+ ++ S+    +   ++  + ++ +G SG ++  +C EA              GM   + R   V+ +DFE    K+    ++K +     W   F C+
Sbjct:  525 FLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQLSE-----ESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEALVGPLHGMPGADLSGMIPGQMR--PVSYQDFENVFCKIQPSISQKELDTYTEWNKMFGCS 735          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 53/184 (28.80%), Postives = 101/184 (54.89%), Query Frame = -2
Query:  238 FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAP-SIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL-RERRIHVTQED 756
            F  +SG E+  K++G     +R +F  A++    H   S ++M  ID I  A + S SG+  + V+ +++ + L ++DG E  N +  +  TNR+++LD A +R GR    I+   P++E R+ I +IH++++     L   +D+ K+A      SGA+++ +   A +++L R  ++ V  +D
Sbjct:  634 FRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEI-DAMLPSRSGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDD 816          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = -2
Query:  268 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---------NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL----DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 756
            F  +S S L  K++GE  ++VR LF +A++ +PSIIF+DEIDS+ SAR  S  GN     +R   E L Q      +          ++ VL ATN    +D A  R  R  R+   P P+E +R     ++LK     ++L    D++ I +     SG++L A+  +A M  LR
Sbjct:  520 FFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR--SSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE---DIEAIVKATEYYSGSDLTALAKDAAMGPLR 688          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  268 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE---------ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 756
            F  +S S L  KY+G+  ++VR LF +A+    S+IF+DEIDSI SAR +SG+ +  S  +R   E L Q               S ++ VL ATN    +D+A  R  R  ++   P P +E+R   L  +   +++ +   DL+++     G SG+++ A+  +A M  LR
Sbjct:  440 FFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESS--RRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 42/138 (30.43%), Postives = 78/138 (56.52%), Query Frame = -2
Query:  175 SEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 585
            +E Q ++L +LL +LDG +  N + +  ATNR ++LD ALLRPGR D+ ++   P ++ R++IL+ + + +   + +      E+  G + A+L  +  E+ + A+  +  H T E  E  + ++   E+EK   L+K
Sbjct: 1148 NEKQVSLLSQLLIELDGIQGRNGVVIFGATNRPEVLDPALLRPGRFDKIVKVGLPAQKKRVEILQFYGQTLGYQKTMPWAYFGERTVGFTAADLATLMNESALKAILNQSNH-TIETLEHGIERLTTSESEKYTVLKK 1284          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_OLTVI (Cell division protease ftsH homolog OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 44/153 (28.76%), Postives = 84/153 (54.90%), Query Frame = -2
Query:  199 DEIDSIGSARME-SGSGNGDSEVQRTMLE----LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 642
            DE+++  S   + S   + + EV++  L     LL ++DG    N + V  ATNR ++LD AL+RPGR D+ +    P ++ R++ILK++++++   + I  +  A +  G S A+L A+  ++ + A+   + H T +  E  +  + K +T
Sbjct: 1474 DEMETRSSESTKASHESSNEMEVEKNQLSALIRLLVEMDGLNPLNGVIVFGATNRPEVLDPALIRPGRFDQILPIELPGKQKRVEILKLYAKKLGTAKSISWEYFANRTVGLSAADLAAIMNQSTILAVFNDQRH-TLKTLEYGLNIIYKPKT 1625          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 54/176 (30.68%), Postives = 86/176 (48.86%), Query Frame = -2
Query:  223 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 750
            RV    L+  Y+GE +  +R+ F  AR+  P ++F DE D++   R +SG  N   E++R +  LL  +D  +    +  + ATN    LD A+ R  R D  + F  P        LK+  +  N+    D  + +  + G S AE++ VCT+A    + ERR  V + DF  A+
Sbjct:  148 RVKLDRLISSYLGETATNIRKTFEFARKQ-PCVLFFDEFDALARTRDDSGEHN---ELRRVVNSLLLFIDNMQPKGFL--IAATNLDRSLDAAIWR--RFDEVLWFDRPEAAMIGRFLKLKFK--NVPVAFDPARNSAALEGYSFAEIERVCTQAIKAMIIERRKQVQERDFNRAL 313          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: YCF46_ODOSI (Uncharacterized AAA domain-containing protein ycf46 OS=Odontella sinensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 49/184 (26.63%), Postives = 87/184 (47.28%), Query Frame = -2
Query:  172 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 717
            +GE    +R++  +A   +P I+++DE+D   S     G     + V  T +  L+     E +  + V+   N +D+L   ++R GR D       P  E R +I KIH +  R N  +  D KK+A+     SGAE++    EA M+   +++   T +D  +A+ +++     +N    KL
Sbjct:  300 VGESESRLRQMIDVAETLSPCILWIDEMDKAFSNNDSRGDSGTSNRVLATFISWLS-----EKTKPVFVVATANNVDLLPLEIIRKGRFDEIFFLDLPELEERKEIFKIHIQEFRPNSWKLFDYKKLAQLSESFSGAEIRQSIIEA-MYQAFDQQREFTTDDICLALKQLIPLAQLENSQTLKL 477          
The following BLAST results are available for this feature:
BLAST of DC887343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
FIGN_DANRE5.480e-1426.36Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
YR476_MIMIV7.157e-1428.80Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
YKX4_SCHPO1.221e-1333.52Uncharacterized AAA domain-containing protein C328... [more]
SUR2_SCHPO1.221e-1332.37Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
FTSH_CHLVU2.302e-1230.43Cell division protease ftsH homolog OS=Chlorella v... [more]
FTSH_OLTVI3.007e-1228.76Cell division protease ftsH homolog OS=Oltmannsiel... [more]
Y4KL_RHISN1.492e-1130.68Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]
YCF46_ODOSI1.949e-1126.63Uncharacterized AAA domain-containing protein ycf4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887343 EIC Citrus sinensis cDNA clone EIC0235 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887343 ID=DC887343; Name=DC887343; organism=Citrus sinensis; type=EST; length=757bp
GGAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTGGACTAATTCAGAACCAGAAACCCT
GATGAAA
back to top