DC887343

Overview
NameDC887343
Unique NameDC887343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.130e-50
Identity = 99/185 (53.51%), Postives = 136/185 (73.51%), Query Frame = -2
Query:  202 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 756
            +++++G +LVQ +IG+G+++VR+ F +A+E  P+IIF+DE+D+IG+ R +S   +GD EVQRTMLELLNQLDGF +   IKV+ ATNRIDILD ALLR GR+DRKIEFP PNEE+R  IL+IHSR+MN+   ++  ++A      +GA+LKAVC EAGM ALR     +   DF     +VM K+
Sbjct:  230 YLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAKK 413          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 4.745e-50
Identity = 98/187 (52.41%), Postives = 142/187 (75.94%), Query Frame = -2
Query:  196 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 756
            F++++  +LVQ YIGEG+++VR+ F +A+E AP+IIF+DE+D+IG+ R +S   +GD EVQRTMLELLNQLDGF + +++KVL ATNR+D+LD ALLR GR+DRKIEFP P+E+SR  IL+IHSR+M     I+ +++A   +  +GA+LKAV  EAGM ALR  +  V  EDF   +++V  ++++
Sbjct:  243 FLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK-SGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSK 428          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.057e-49
Identity = 99/181 (54.70%), Postives = 132/181 (72.93%), Query Frame = -2
Query:  214 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 756
            F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L+ VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.057e-49
Identity = 99/181 (54.70%), Postives = 132/181 (72.93%), Query Frame = -2
Query:  214 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 756
            F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L+ VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.057e-49
Identity = 99/181 (54.70%), Postives = 132/181 (72.93%), Query Frame = -2
Query:  214 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 756
            F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L+ VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.381e-49
Identity = 92/181 (50.83%), Postives = 138/181 (76.24%), Query Frame = -2
Query:  214 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 756
            FI+++GSELV K+IGEG+++VR+LF +AR+H P+++F+DEID+I S R +S + +GD+EVQRTM++LL+++DGF+    I+++ ATNR D+LD+A+LRPGR DR IE P+PN   R  I +IH+R MN+   +D  ++A      SGA++KA+CTEAGMFA+R+ R  V  +DF+ A  K+
Sbjct:  211 FIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKT-SGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDFQSAREKL 390          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.076e-49
Identity = 99/181 (54.70%), Postives = 131/181 (72.38%), Query Frame = -2
Query:  214 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 756
            F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L  VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.169e-48
Identity = 97/189 (51.32%), Postives = 137/189 (72.49%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.169e-48
Identity = 97/189 (51.32%), Postives = 137/189 (72.49%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.169e-48
Identity = 97/189 (51.32%), Postives = 137/189 (72.49%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
The following BLAST results are available for this feature:
BLAST of DC887343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
PRS6A_DICDI2.130e-5053.5126S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6A_YEAST4.745e-5052.4126S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS10_SPETR1.057e-4954.7026S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.057e-4954.7026S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.057e-4954.7026S protease regulatory subunit S10B OS=Homo sapie... [more]
PSMR2_HALSA1.381e-4950.83Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS10_BOVIN3.076e-4954.7026S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS6B_RAT1.169e-4851.3226S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA1.169e-4851.3226S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.169e-4851.3226S protease regulatory subunit 6B OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887343 EIC Citrus sinensis cDNA clone EIC0235 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887343 ID=DC887343; Name=DC887343; organism=Citrus sinensis; type=EST; length=757bp
GGAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTGGACTAATTCAGAACCAGAAACCCT
GATGAAA
back to top