DC887343

Overview
NameDC887343
Unique NameDC887343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.169e-48
Identity = 97/189 (51.32%), Postives = 137/189 (72.49%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.994e-48
Identity = 99/186 (53.23%), Postives = 133/186 (71.51%), Query Frame = -2
Query:  199 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 756
            FIRV GSE VQKY+GEG RMVR++F +A+E++PSIIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ S  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  +      RMNL   +DL+    + +  SGA++ ++C EAGM A+RE R  V  +D E A   V+KK+T
Sbjct:  223 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDT 407          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.801e-48
Identity = 96/185 (51.89%), Postives = 133/185 (71.89%), Query Frame = -2
Query:  202 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 756
            FIRV GSE VQKY+GEG RMVR++F +A+E++P+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL++   + +  SGA++ A+C EAGM A+RE R  V  +DFE      +KK+
Sbjct:  224 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKD 407          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.801e-48
Identity = 95/188 (50.53%), Postives = 136/188 (72.34%), Query Frame = -2
Query:  193 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 756
            FIRV GSE VQKY+GEG R+VR++F +ARE++P+IIF+DEID+I + R ++ +G  D EVQR ++ELLNQ+DGF+ S  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I ++ + +MNL   +DL+    + +  SGAE++++C EAGM A+R+ R  +  +DFE      +KK T +
Sbjct:  212 FIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHE 398          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.801e-48
Identity = 92/187 (49.20%), Postives = 140/187 (74.87%), Query Frame = -2
Query:  196 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 756
            F++++  +LVQ +IG+G+++VR+ F +A+E +P+IIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF + +++KV+ ATNR+D LD ALLR GR+DRK+EFP PNEE+R+ IL+IHSR+M +   I+ +++A   +  +GA LK+VC EAGM ALR+    +  E F   + +V  ++++
Sbjct:  247 FLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSK 432          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.576e-48
Identity = 100/181 (55.25%), Postives = 134/181 (74.03%), Query Frame = -2
Query:  214 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 756
            FIRV GSELV K+IGEG+R+VRE+F +ARE APSI+F+DEID+I S R++ G+ +GD EVQRTML+LL +LDGF+  + +KV+ ATNR+D++D A+LRPGR DR IE P P+   RL+IL IH+R+  +   +DL+ IA+   G SGA+LKAV  EAG  A+R     +T +D   AV KV
Sbjct:  201 FIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGT-SGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVEKV 380          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47
Identity = 93/184 (50.54%), Postives = 134/184 (72.83%), Query Frame = -2
Query:  205 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 756
            FIRV+GSE VQKY+GEG RMVR++F +ARE APSI+F+DE+DSI + R ++ S + D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D +D ALLRPGR+DRKIEFP P+   +  +    + +M+L   +D++ +  +    S A++ ++C EAGM A+R  R  VTQ DFE A +KV+++
Sbjct:  196 FIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDA-STSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVER 378          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.760e-47
Identity = 95/188 (50.53%), Postives = 136/188 (72.34%), Query Frame = -2
Query:  196 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV-AKVMKKETE 756
            FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DE+D+I +AR ++ +G  D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + +MNL   +DL+    + +  S AE+ A+C EAGM A+R+ R  +  +DFE    A V K +T+
Sbjct:  217 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTD 403          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.910e-47
Identity = 96/196 (48.98%), Postives = 135/196 (68.88%), Query Frame = -2
Query:  172 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 756
            F++V  S +V KYIGE +R++RE+F  A+EH P +IFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+   + K++MATNR D LD ALLRPGR+DRKIE P PNE  R++ILKIH  +++    ID + + +  +G +GA+L+ V TEAG  A++E R +V Q D   A  KV   K+ E  +  +KL
Sbjct:  194 FLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQKL 388          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.413e-47
Identity = 95/189 (50.26%), Postives = 134/189 (70.90%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C   GM A+RE    V  +DFE A   V+KK+ +++
Sbjct:  227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEH 414          
The following BLAST results are available for this feature:
BLAST of DC887343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
PRS6B_BOVIN1.169e-4851.3226S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_CAEEL1.994e-4853.23Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_MANSE5.801e-4851.8926S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_DICDI5.801e-4850.5326S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6A_SCHPO5.801e-4849.2026S protease regulatory subunit 6A OS=Schizosaccha... [more]
PSMR_AERPE7.576e-4855.25Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6B_ENCCU2.204e-4750.5426S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS6B_ARATH3.760e-4750.5326S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS10_SCHPO4.910e-4748.98Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS6B_MOUSE6.413e-4750.2626S protease regulatory subunit 6B OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionDC887343 EIC Citrus sinensis cDNA clone EIC0235 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887343 ID=DC887343; Name=DC887343; organism=Citrus sinensis; type=EST; length=757bp
GGAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTGGACTAATTCAGAACCAGAAACCCT
GATGAAA
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