DC887317

Overview
NameDC887317
Unique NameDC887317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 78/131 (59.54%), Postives = 88/131 (67.18%), Query Frame = -3
Query:  111 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 503
            K G   S      SRS KAGL FPVGRV R L+KG YAQRVG+G+P                 AGNAARDNKK RIIPRH+QLA++NDEE +KLLG VTIA GGVLPNIHQNLLPKK   + G+  + SQE
Sbjct:    6 KSGGKASSGKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGTKPGK--NASQE 134          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  147 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAA 503
            KGG+  S      SRS KAGL FPVGRV R L++G YAQR+GSG+P                 AGNAARDNKK RIIPRH+QLA++ND+E +KLLG+VTIA GGVLPNIHQNLLPKK+A
Sbjct:    5 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSA 123          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  147 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAA 503
            KGG+  S      SRS KAGL FPVGRV R L++G YAQR+GSG+P                 AGNAARDNKK RIIPRH+QLA++ND+E +KLLG+VTIA GGVLPNIHQNLLPKK+A
Sbjct:    5 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSA 123          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 74/118 (62.71%), Postives = 83/118 (70.34%), Query Frame = -3
Query:  147 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAA 500
            GG+     +   SRS KAGL FPVGRV R L+KG YAQRVG+G+P                 AGNAARDNKK RIIPRH+QLA++NDEE +KLLG VTIA GGVLPNIHQNLLPKK A
Sbjct:    7 GGKASGSKSSAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTA 124          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 79/132 (59.85%), Postives = 92/132 (69.70%), Query Frame = -3
Query:  111 GGRGR--SKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 500
            GG+G+  S +    SRS KAGL FPVGRV R L+KG YAQRVGSG+P                 AGNAARDNKK+RIIPRH+QLA++NDEE +KLLG VTIA GGVLPNIHQ+LLP    A+K + G  SQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLP----AKKAKPGKASQE 130          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 76/125 (60.80%), Postives = 87/125 (69.60%), Query Frame = -3
Query:  123 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGS 497
            G+    D    SRS KAGL FPVGR+ R L+KG YAQRVGSG+P                 AGNAARDNKK+RIIPRH+QLA++NDEE +KLLG VTIA GGVLPNIHQNLLPKK+   KG+  S
Sbjct:    5 GKSAGADKASTSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSG--KGDKAS 127          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = -3
Query:  150 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKA 497
            G G +K  K +SRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                 AGNAARDNKK RI+PRHIQLAV+NDEE S+LLG+VTIA+GGV+PNIH  LLPKKA
Sbjct:    9 GSGAAK--KAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = -3
Query:  150 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKA 497
            G G +K  K +SRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                 AGNAARDNKK RI+PRHIQLAV+NDEE S+LLG+VTIA+GGV+PNIH  LLPKKA
Sbjct:    9 GSGAAK--KAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 79/132 (59.85%), Postives = 93/132 (70.45%), Query Frame = -3
Query:  111 GGRGRS--KDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 500
            GG+G++   +    SRS KAGL FPVGRV R L+KG YAQR+GSG+P                 AGNAARDNKK+RIIPRH+QLA++NDEE +KLLG VTIA GGVLPNIHQNLLPKK+   KG +   SQE
Sbjct:    3 GGKGKAGTSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSG--KGGV-KASQE 131          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 74/121 (61.16%), Postives = 87/121 (71.90%), Query Frame = -3
Query:  111 KPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 473
            KPVSRS KAGLQFPVGR+ R+LKKGRYAQRVG+G+P                 AGNAARDNKKNRIIPRH+ LA++NDEE  KLL  VTIA+GGVLPNI+  LLPKK A +  +    S++
Sbjct:   24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
The following BLAST results are available for this feature:
BLAST of DC887317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_PODAN3.008e-3459.54Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A2_YEAST3.008e-3462.18Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ... [more]
H2A1_YEAST3.008e-3462.18Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ... [more]
H2A_PHANO3.929e-3462.71Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A2_PICST3.929e-3459.85Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A2_PICGU3.929e-3460.80Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A2_ORYSJ3.929e-3464.66Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI3.929e-3464.66Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A1_CANAL3.929e-3459.85Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A6_ORYSJ5.131e-3461.16Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionDC887317 EIC Citrus sinensis cDNA clone EIC0192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887317 ID=DC887317; Name=DC887317; organism=Citrus sinensis; type=EST; length=595bp
ATTATCCAAAATGAGATTTACACATATGAAAGTGAAAACCCAAATTCACT
ACATACTTATAAACATAACCCGAAATCGAAGATTCCAGATCCCTAATTAA
ACCCCTAAAACTCCTGAGACACGGATCCAATTTCGCCCTTCCGTGCTGCA
GCTTTCTTCGGCAGCAAGTTCTGATGAATGTTAGGCAACACACCACCATT
AGCGATAGTCACAGAGCCAAGCAGTTTGCTAAACTCCTCGTCGTTTTTCA
CAGCCAACTGAATGTGCCTTGGAATGATTCTGTTCTTCTTGTTGTCCCTC
GCCGCGTTCCCAGCCAACTCCAAAACCTCAGCAGCAAGGTATTCAAGGAC
GGCGGAAAGATAGACGGGAGAGCCGGATCCGACGCGCTGGGCGTATCGGC
CTTTCTTGAGGAAGCGAGCGACACGGCCAACCGGGAACTGGAGACCGGCC
TTGTGGGATCTGGACACCGGTTTCGTGTCCTTGGACCTGCCCCGCCCACC
CTTGGTTGCTGCAGCTTCTGAACTCATGGTTGAGAAATGGGTTTTTCTTT
TGAGGAAGATTGAGAGTTTTGAATAAATTCGAAGCGGTTTGCGAT
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