DC887281

Overview
NameDC887281
Unique NameDC887281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4107 contig Csv1_Contig4107:1031..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of DC887281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UBIQ_LUPAL9.009e-25100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS9.009e-25100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU9.009e-25100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN9.009e-25100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN9.009e-25100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA9.009e-25100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA9.009e-25100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA9.009e-25100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA9.009e-25100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF9.009e-25100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887281 EIC Citrus sinensis cDNA clone EIC0131 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887281 ID=DC887281; Name=DC887281; organism=Citrus sinensis; type=EST; length=282bp
ACTTGATGTGACAAAAAGACTGAAACAGAAGCAGGACTAGCAAATGAAAA
ATAAATATTACTGGCTACAGCAGAGCAGAACAGACACGGCGGCAAGCAGA
TAACATTCTTAGAATTCACCACCACGAAGGCGGAGCACAAGATGGAGGGT
GGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCT
GCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTG
TCCTGAATCTTTGCCTTAACATTATCAATAGT
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