DC887281

Overview
NameDC887281
Unique NameDC887281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4107 contig Csv1_Contig4107:1031..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.626e-24
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.626e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.626e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            T++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.960e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.960e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            +I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 SIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            +I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 SIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.219e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = -1 
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            +IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 SIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of DC887281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UBIQ_TRYBB7.626e-2496.36Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_NEUCR7.626e-2496.36Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_ACECL7.626e-2494.55Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_SHEEP9.960e-2494.55Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_ACACA9.960e-2496.36Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_STRPU1.699e-2394.55Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_LEIMA1.699e-2394.55Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_ENCCU1.699e-2394.55Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_AGLNE1.699e-2394.55Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_PHYIN2.219e-2394.55Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887281 EIC Citrus sinensis cDNA clone EIC0131 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887281 ID=DC887281; Name=DC887281; organism=Citrus sinensis; type=EST; length=282bp
ACTTGATGTGACAAAAAGACTGAAACAGAAGCAGGACTAGCAAATGAAAA
ATAAATATTACTGGCTACAGCAGAGCAGAACAGACACGGCGGCAAGCAGA
TAACATTCTTAGAATTCACCACCACGAAGGCGGAGCACAAGATGGAGGGT
GGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCT
GCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTG
TCCTGAATCTTTGCCTTAACATTATCAATAGT
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