DC887281

Overview
NameDC887281
Unique NameDC887281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4107 contig Csv1_Contig4107:1031..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.219e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = -1
Query:  118 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 279
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.101e-22
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = -1
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -1
Query:  124 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 282
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   11 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.656e-19
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -1
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            T+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   22 TVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.387e-19
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = -1
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   22 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = -1
Query:  115 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 282
            TID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:   22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGQ 77          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = -1
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = -1
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = -1
Query:  118 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            TID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887281 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = -1
Query:  115 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 279
            +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG+
Sbjct:   23 VDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77          
The following BLAST results are available for this feature:
BLAST of DC887281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UBIQ_DICDI2.219e-2396.30Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEITA1.101e-2292.73Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.438e-2296.23Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP5.656e-1980.00Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC7.387e-1978.18Ubiquitin-like protein OS=Autographa californica n... [more]
RUB2_ORYSJ1.104e-1464.29NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_DESAN1.442e-1467.27NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ORYSJ1.883e-1465.45NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.883e-1465.45NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME2.459e-1460.00NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC887281 EIC Citrus sinensis cDNA clone EIC0131 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887281 ID=DC887281; Name=DC887281; organism=Citrus sinensis; type=EST; length=282bp
ACTTGATGTGACAAAAAGACTGAAACAGAAGCAGGACTAGCAAATGAAAA
ATAAATATTACTGGCTACAGCAGAGCAGAACAGACACGGCGGCAAGCAGA
TAACATTCTTAGAATTCACCACCACGAAGGCGGAGCACAAGATGGAGGGT
GGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCT
GCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTG
TCCTGAATCTTTGCCTTAACATTATCAATAGT
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