DC887280

Overview
NameDC887280
Unique NameDC887280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44P_CANMA (60S ribosomal protein L44 P OS=Candida maltosa GN=L41P1A PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.827e-43
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYCK +ECRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_PICGU (60S ribosomal protein L44 OS=Pichia guilliermondii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++TYCK K+CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKDCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_YEAST (60S ribosomal protein L42 OS=Saccharomyces cerevisiae GN=RPL42A PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.074e-42
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_SCHPO (60S ribosomal protein L44 OS=Schizosaccharomyces pombe GN=rpl44 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.403e-42
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  162 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 470
            MVN+PKT+KTYC  K CRKHT+H+VTQYKKG DS  AQGKRRYDRKQSG+GGQTKPVFHKKAK TKK+VLRL+C  CK+ +Q  +KRCKHFE+GG+KK KG +
Sbjct:    1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAA 103          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_YARLI (60S ribosomal protein L44 OS=Yarrowia lipolytica GN=RPL44 PE=3 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.393e-42
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVN+PKT+ TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTK +FHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKQIFHKKAKTTKKVVLRLECVKCKVKMQLALKRCKHFELGGDKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_KLULA (60S ribosomal protein L44 OS=Kluyveromyces lactis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.393e-42
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYCK KECRKH  HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHAQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_DEBOC (60S ribosomal protein L44 OS=Debaryomyces occidentalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.393e-42
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTK +FHKKAKTTKK+VL+L+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQRGYGGQTKQIFHKKAKTTKKVVLKLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_ASHGO (60S ribosomal protein L44 OS=Ashbya gossypii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 5.331e-42
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +F KKAKTTKK+VLRL+C  CK  +Q P+KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKACRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKQIFRKKAKTTKKVVLRLECLSCKTKAQLPLKRCKHFELGGEKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_KLUMA (60S ribosomal protein L44 OS=Kluyveromyces marxianus GN=RPL44 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 9.093e-42
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYCK K CRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKACRKHSQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44Q_CANMA (60S ribosomal protein L44 Q OS=Candida maltosa GN=RIM-C PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.188e-41
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVN+PKT+ TYCK K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKG 101          
The following BLAST results are available for this feature:
BLAST of DC887280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44P_CANMA2.827e-4379.2160S ribosomal protein L44 P OS=Candida maltosa GN=... [more]
RL44_PICGU3.692e-4379.2160S ribosomal protein L44 OS=Pichia guilliermondii... [more]
RL44_YEAST1.074e-4279.2160S ribosomal protein L42 OS=Saccharomyces cerevis... [more]
RL44_SCHPO1.403e-4273.7960S ribosomal protein L44 OS=Schizosaccharomyces p... [more]
RL44_YARLI2.393e-4278.2260S ribosomal protein L44 OS=Yarrowia lipolytica G... [more]
RL44_KLULA2.393e-4277.2360S ribosomal protein L44 OS=Kluyveromyces lactis ... [more]
RL44_DEBOC2.393e-4278.2260S ribosomal protein L44 OS=Debaryomyces occident... [more]
RL44_ASHGO5.331e-4277.2360S ribosomal protein L44 OS=Ashbya gossypii GN=RP... [more]
RL44_KLUMA9.093e-4276.2460S ribosomal protein L44 OS=Kluyveromyces marxian... [more]
RL44Q_CANMA1.188e-4176.2460S ribosomal protein L44 Q OS=Candida maltosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887280 EIC Citrus sinensis cDNA clone EIC0130 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887280 ID=DC887280; Name=DC887280; organism=Citrus sinensis; type=EST; length=534bp
TGGATAAAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACA
GCATCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAA
AGTTCCATCAAGTGCAGCAAAGTAAAAAGCATACAAACAAAAATAAAGGC
ATTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAA
GTGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGC
ATTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAG
ACAGGCTTGGTCTGACCACCATAGCCAGACTGTTTACGATCATACCGTCT
CTTCCCTTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCT
TGTGCAAGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAGGTCTTCTTA
GTCTTGGGAACGTTCACCATGATGGCCGGCGGCGGCGACGAGGAGGTGAG
AGCTCTTCGTAACTTCCAAATGCTGCCTAAGGGT
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