DC887280

Overview
NameDC887280
Unique NameDC887280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:2..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_CANTR (60S ribosomal protein L44 OS=Candida tropicalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVN+PKT+ TYCK K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_CAEEL (60S ribosomal protein L44 OS=Caenorhabditis elegans GN=rpl-41 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPK ++T+C  K CRKHT HKVTQYKKGK+S  AQG+RRYDRKQSG+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:    1 MVNVPKARRTFCDGK-CRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRG 100          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_BRUMA (60S ribosomal protein L44 OS=Brugia malayi GN=rpl-44 PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.112e-39
Identity = 73/101 (72.28%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+C  K CR+HT+HKVTQYKKGK+S  AQG+RRYD KQ G+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:    1 MVNVPKTRRTFCDGK-CRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRKKAKTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKKTRG 100          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_TAKRU (60S ribosomal protein L36a OS=Takifugu rubripes GN=rpl36a PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.224e-39
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++TYCK  +C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_ICTPU (60S ribosomal protein L36a OS=Ictalurus punctatus GN=rpl36a PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.224e-39
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++TYCK  +C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_DANRE (60S ribosomal protein L36a OS=Danio rerio GN=rpl36a PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.224e-39
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++TYCK  +C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_CHLRE (60S ribosomal protein L44 OS=Chlamydomonas reinhardtii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.516e-39
Identity = 76/98 (77.55%), Postives = 82/98 (83.67%), Query Frame = -2
Query:  177 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 470
            MVNVPKTK+ +CK   C+KH + KVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR+QCQ CK      +KRCKHFEIGGDKK
Sbjct:    1 MVNVPKTKRAFCKG--CKKHMMMKVTQYKTGKASLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIGGDKK 96          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_RAT (60S ribosomal protein L36a OS=Rattus norvegicus GN=Rpl36a PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.576e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_PIG (60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.576e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_MOUSE (60S ribosomal protein L36a OS=Mus musculus GN=Rpl36a PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.576e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
The following BLAST results are available for this feature:
BLAST of DC887280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_CANTR1.551e-4176.2460S ribosomal protein L44 OS=Candida tropicalis GN... [more]
RL44_CAEEL2.925e-4074.2660S ribosomal protein L44 OS=Caenorhabditis elegan... [more]
RL44_BRUMA1.112e-3972.2860S ribosomal protein L44 OS=Brugia malayi GN=rpl-... [more]
RL36A_TAKRU4.224e-3975.7360S ribosomal protein L36a OS=Takifugu rubripes GN... [more]
RL36A_ICTPU4.224e-3975.7360S ribosomal protein L36a OS=Ictalurus punctatus ... [more]
RL36A_DANRE4.224e-3975.7360S ribosomal protein L36a OS=Danio rerio GN=rpl36... [more]
RL44_CHLRE5.516e-3977.5560S ribosomal protein L44 OS=Chlamydomonas reinhar... [more]
RL36A_RAT3.576e-3874.7660S ribosomal protein L36a OS=Rattus norvegicus GN... [more]
RL36A_PIG3.576e-3874.7660S ribosomal protein L36a OS=Sus scrofa GN=RPL36A... [more]
RL36A_MOUSE3.576e-3874.7660S ribosomal protein L36a OS=Mus musculus GN=Rpl3... [more]

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Properties
Property NameValue
Genbank descriptionDC887280 EIC Citrus sinensis cDNA clone EIC0130 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887280 ID=DC887280; Name=DC887280; organism=Citrus sinensis; type=EST; length=534bp
TGGATAAAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACA
GCATCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAA
AGTTCCATCAAGTGCAGCAAAGTAAAAAGCATACAAACAAAAATAAAGGC
ATTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAA
GTGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGC
ATTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAG
ACAGGCTTGGTCTGACCACCATAGCCAGACTGTTTACGATCATACCGTCT
CTTCCCTTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCT
TGTGCAAGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAGGTCTTCTTA
GTCTTGGGAACGTTCACCATGATGGCCGGCGGCGGCGACGAGGAGGTGAG
AGCTCTTCGTAACTTCCAAATGCTGCCTAAGGGT
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