DC887280

Overview
NameDC887280
Unique NameDC887280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:2..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_HUMAN (60S ribosomal protein L36a OS=Homo sapiens GN=RPL36A PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.576e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_BOVIN (60S ribosomal protein L36a OS=Bos taurus GN=RPL36A PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.576e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_AEDTR (60S ribosomal protein L44 OS=Aedes triseriatus GN=RpL44 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 7.966e-38
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPK ++TYCK  +C+ H +HKVTQYKK K+  A+QG+RRYDRKQ G+GGQTKP+F KKAKTTKKIVLR++C  CK+  Q P+KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKQRRTYCK--KCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKKAKTTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKG 99          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36L_HUMAN (60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 7.966e-38
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36L_PONAB (60S ribosomal protein L36a-like OS=Pongo abelii GN=RPL36AL PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.318e-37
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRK+SGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKRSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_DICDI (60S ribosomal protein L36a OS=Dictyostelium discoideum GN=rpl36a PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.272e-35
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  171 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK 470
            MVN+PK +KT+C   +C KHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKKIVLR++C  C +  Q  +KRCK FE+GG+KK K
Sbjct:    1 MVNIPKARKTHCV--KCNKHTPHKVTQYKAGKPSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMEC-SCGYKKQQVLKRCKRFELGGEKKSK 97          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_PLAF7 (60S ribosomal protein L44 OS=Plasmodium falciparum (isolate 3D7) GN=RPL44 PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.661e-35
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT+KTYC +K C+KHT+HKV+QYKKGK+ L++ G+RRYD KQ G+GGQTKPVF KKAKTTKKIVL+L+C  CK      +KRCK FE+G DKK KG
Sbjct:    1 MVNVPKTRKTYCSNK-CKKHTMHKVSQYKKGKERLSSLGRRRYDMKQKGFGGQTKPVFKKKAKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMGADKKKKG 100          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL36A_PAPAN (60S ribosomal protein L36a OS=Papio anubis GN=RPL36A PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.132e-34
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVNVPKT++T+CK  +  KH  HKVTQYKKGKDSL A GKRRYDRKQSGYGG TKP+F KKAKTTKKIVLRL+C    C+       KRCKHFE+GGDK  KG
Sbjct:    1 MVNVPKTRQTFCKKYD--KHQPHKVTQYKKGKDSLYALGKRRYDRKQSGYGGHTKPIFWKKAKTTKKIVLRLECVEPNCRSERMLATKRCKHFELGGDKTRKG 101          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_TRYBB (60S ribosomal protein L44 OS=Trypanosoma brucei brucei GN=RPL44 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.719e-32
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  177 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 470
            MVN PK KK +C  + C  H   KV QYK GK  L A+GKRRYDRKQSGYGGQTKP+FHKKAKTTKKIVL+LQC  CK + Q+ +KR KHFE+   KK
Sbjct:    1 MVNYPKKKKMHCPDERCNAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELNDKKK 98          
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_ENCCU (60S ribosomal protein L44 OS=Encephalitozoon cuniculi GN=RPL44 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = -2
Query:  168 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 470
            MVN+PKT+ T+CK  +C+ ++ HKV+Q KK KD+  AQG RRY RKQ GYGGQTKP+  +KAK TKK+VL L+C  CK   Q P+KR KH   GG++K KG
Sbjct:    1 MVNIPKTRNTFCK--KCKGYSAHKVSQAKKSKDNPRAQGNRRYARKQRGYGGQTKPILRRKAKVTKKLVLNLECTKCKFSHQKPLKRAKHVIFGGERKRKG 99          
The following BLAST results are available for this feature:
BLAST of DC887280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL36A_HUMAN3.576e-3874.7660S ribosomal protein L36a OS=Homo sapiens GN=RPL3... [more]
RL36A_BOVIN3.576e-3874.7660S ribosomal protein L36a OS=Bos taurus GN=RPL36A... [more]
RL44_AEDTR7.966e-3869.3160S ribosomal protein L44 OS=Aedes triseriatus GN=... [more]
RL36L_HUMAN7.966e-3873.7960S ribosomal protein L36a-like OS=Homo sapiens GN... [more]
RL36L_PONAB2.318e-3772.8260S ribosomal protein L36a-like OS=Pongo abelii GN... [more]
RL36A_DICDI1.272e-3571.0060S ribosomal protein L36a OS=Dictyostelium discoi... [more]
RL44_PLAF71.661e-3568.3260S ribosomal protein L44 OS=Plasmodium falciparum... [more]
RL36A_PAPAN3.132e-3469.9060S ribosomal protein L36a OS=Papio anubis GN=RPL3... [more]
RL44_TRYBB1.719e-3265.3160S ribosomal protein L44 OS=Trypanosoma brucei br... [more]
RL44_ENCCU8.828e-2957.4360S ribosomal protein L44 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionDC887280 EIC Citrus sinensis cDNA clone EIC0130 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887280 ID=DC887280; Name=DC887280; organism=Citrus sinensis; type=EST; length=534bp
TGGATAAAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACA
GCATCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAA
AGTTCCATCAAGTGCAGCAAAGTAAAAAGCATACAAACAAAAATAAAGGC
ATTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAA
GTGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGC
ATTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAG
ACAGGCTTGGTCTGACCACCATAGCCAGACTGTTTACGATCATACCGTCT
CTTCCCTTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCT
TGTGCAAGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAGGTCTTCTTA
GTCTTGGGAACGTTCACCATGATGGCCGGCGGCGGCGACGAGGAGGTGAG
AGCTCTTCGTAACTTCCAAATGCTGCCTAAGGGT
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