DC887280

Overview
NameDC887280
Unique NameDC887280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:2..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_THEAC (50S ribosomal protein L44E OS=Thermoplasma acidophilum GN=rpl44e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = -2 
Query:  192 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 467
            + +PK   TYC    C+KHT H V + +K K S    G+RR+ R  SGYGG  +P F  + K TK+I LRL C  C      P  R K FEI
Sbjct:    1 MKMPKKIMTYCPY--CKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREKPTKRIALRLVCDECHKAITPPGIRAKKFEI 90
[Close]
BLAST of DC887280 vs. ExPASy Swiss-Prot
Match: RL44_AERPE (50S ribosomal protein L44E OS=Aeropyrum pernix GN=rpl44e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.370e-12
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = -2 
Query:  240 PKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGC 458
            PK  +TYC    C  HT H+V QY+ GK    A G+RRY RKQ GYG Q +P   + AK TKK VL + C  C
Sbjct:    4 PKRIRTYCP--RCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVC 74
The following BLAST results are available for this feature:
BLAST of DC887280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_THEAC6.791e-1343.4850S ribosomal protein L44E OS=Thermoplasma acidoph... [more]
RL44_AERPE3.370e-1249.3250S ribosomal protein L44E OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887280 EIC Citrus sinensis cDNA clone EIC0130 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887280 ID=DC887280; Name=DC887280; organism=Citrus sinensis; type=EST; length=534bp
TGGATAAAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACA
GCATCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAA
AGTTCCATCAAGTGCAGCAAAGTAAAAAGCATACAAACAAAAATAAAGGC
ATTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAA
GTGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGC
ATTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAG
ACAGGCTTGGTCTGACCACCATAGCCAGACTGTTTACGATCATACCGTCT
CTTCCCTTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCT
TGTGCAAGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAGGTCTTCTTA
GTCTTGGGAACGTTCACCATGATGGCCGGCGGCGGCGACGAGGAGGTGAG
AGCTCTTCGTAACTTCCAAATGCTGCCTAAGGGT
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