DC887279

Overview
NameDC887279
Unique NameDC887279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144B_MOUSE (E3 ubiquitin-protein ligase RNF144B OS=Mus musculus GN=Rnf144b PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = -2 
Query:  255 SRVTCPGLDCKS--VLEYEACKPVLPKEVLELWGEALCQELIDAAQ-RFYCPFKDCSAM--LVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 707
            S +TCP + C +   L+      ++P +  +L+     +  +     R +CP  DC  +  +   + G+ V+ E  CP CH  FC+ C   WH   +C + Q   + E G     +     +    +CP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:   71 SPITCPDMVCLNHGTLQETEIACLVPLDEFQLYQRLKFEREVHMDPLRTWCPVADCQTVCHISAGDPGQPVLVE--CPSCHLKFCSCCKDAWHEESSCRDSQSA-MPEHGA----LFGTDADAPIKQCPVCRIYIERNEGCAQMMCKNCKHTFCWYC 220
The following BLAST results are available for this feature:
BLAST of DC887279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
R144B_MOUSE1.730e-1128.03E3 ubiquitin-protein ligase RNF144B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionDC887279 EIC Citrus sinensis cDNA clone EIC0129 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887279 ID=DC887279; Name=DC887279; organism=Citrus sinensis; type=EST; length=708bp
ACACATGTTTCTTACATAAAAGGAAAACAAAAGTGCTTTCCCAAAGATTC
AGCATGAAGCACAACACAAATGATTCACACTTCTTCACAATCTGCTTTGA
GTCTTATAATAATATCACAAAAGAGTCTTTAAAAAGATGCAGTTTAAGAT
TAAATATCAGTAGATAATTCATATTCTTAATATTCTGAATTCGCAGTCCT
ATTAATATGTTAGTTTCTTGAGCAACCACTGTGGTTTTGAGTCCATTCTG
CTTCACATCCATAACAGAACTGGAATTGGCACCTGCAAGTCATATGAGGG
CAACCTTCAGTTCTTTCAACATAGTATTTGCAATGAGGGCACCTACTCCA
TTTCTTCTCCTTAGCAAGCTCTCTCACCATTAAATCTTCCCTGCCTCTTT
CATCAACATTCAGTCTTTGATACTCCTCACAATTAACACCAGGATGCCAT
GGCACATAACACTGAGCACAAAACAATCTATGGCAAAAAGGGCACTCAGA
TTCACTTATAACAGTTTCTCCATCATTTTCGTAGACCAACATGGCTGAAC
AATCCTTGAATGGGCAGTAAAACCTCTGTGCAGCATCAATCAGCTCCTGA
CAAAGAGCTTCCCCCCAAAGCTCAAGCACTTCTTTTGGAAGCACAGGCTT
ACAAGCTTCATATTCCAGGACGGACTTGCAGTCCAGACCAGGGCATGTAA
CCCTACTG
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