DC887269

Overview
NameDC887269
Unique NameDC887269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:65..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.757e-66
Identity = 118/169 (69.82%), Postives = 148/169 (87.57%), Query Frame = -2
Query:  234 NYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 740
            NY KT   PRRP+EKER+DAEL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.757e-66
Identity = 119/172 (69.19%), Postives = 148/172 (86.05%), Query Frame = -2
Query:  228 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 743
            R   KT+K PRRP+E  RLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 246.128 bits (627), Expect = 1.530e-64
Identity = 117/171 (68.42%), Postives = 144/171 (84.21%), Query Frame = -2
Query:  231 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 743
            R Y KT+  P+RPYE  RLDAEL+L GE+GL+ KRE++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.409e-64
Identity = 116/171 (67.84%), Postives = 144/171 (84.21%), Query Frame = -2
Query:  231 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 743
            R Y KT+  P+RPYE  RLDAEL+L GE+GL+ K+E++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.453e-64
Identity = 114/168 (67.86%), Postives = 147/168 (87.50%), Query Frame = -2
Query:  228 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 731
            K  K PRRP+EKERLD EL+L+G +GL+ KRE+WRV+Y L+++R AAR+LLTL++K+P+R+FEG ALLRR+ + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.443e-62
Identity = 110/170 (64.71%), Postives = 139/170 (81.76%), Query Frame = -2
Query:  237 YRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 746
            Y N+ + +K PRRP+EKERLD E++L G+YGLRCKRE+WRV   LS++R  AR LLTL E +PRR+ EG A++RR H YGFL+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:    4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.292e-52
Identity = 102/174 (58.62%), Postives = 134/174 (77.01%), Query Frame = -2
Query:  228 YRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 746
            YR + K    PRRP+EKER+D EL++ G+YGL+ K+E+WR+QY L+R R  AR LLTL E + +R FEG ALLRRM R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:    7 YRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.880e-46
Identity = 93/172 (54.07%), Postives = 127/172 (73.84%), Query Frame = -2
Query:  231 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 743
            RN+  T+K P+ PYE+ER DAEL+LVG++GL+ K+E+ RV Y L  +R  A+ +L  D K+P+R+ EG ALLRR+H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:    6 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 84/122 (68.85%), Postives = 103/122 (84.43%), Query Frame = -2
Query:  366 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 731
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:    9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          
BLAST of DC887269 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.561e-29
Identity = 70/155 (45.16%), Postives = 103/155 (66.45%), Query Frame = -2
Query:  267 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 731
            K +  P  P+ KERL  E++L+GEYGLR KRE+W     L R R+ AR+LL L  +   +  E +ALL+R++  G ++E+   LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:    9 KKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
The following BLAST results are available for this feature:
BLAST of DC887269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9_DICDI4.757e-6669.8240S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9A_SCHPO4.757e-6669.1940S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9B_YEAST1.530e-6468.4240S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST3.409e-6467.8440S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_CAEEL4.453e-6467.8640S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9_TRYBB5.443e-6264.71Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO2.292e-5258.6240S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI1.880e-4654.0740S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS9_PIG4.333e-4368.8540S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS4_IGNH43.561e-2945.1630S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionDC887269 EIC Citrus sinensis cDNA clone EIC0113 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887269 ID=DC887269; Name=DC887269; organism=Citrus sinensis; type=EST; length=762bp
ACNAACATTCTCTCATGAGTAGTCTGTAAGTAGCAAAGCAAGCAAAACCT
CCTATTATAGGAAGAAAATTAGCAAAAACATAAAACTTAAGAGAAGATAA
GTCGATTTGCAAAGTTCAGCCAGAGTTCCTACTGTAACCATAAAAAAACT
ATCTGCTCACACAAGGTAATTTATTCTTCATCCTCTTCATCTCCATCTCC
ACCTGCGGCCTTCTTGGCAGCAGCCTTAATGTTCCTTCTCTTCACTCTTC
CGGGGCGCCCGCCTCCAAATGGACTTGTGAGTGAGAATTCAATGTGCTTC
TGGGAATCAACCCTCACTACAAATGAGGGAATGTTGACAAGCTGCCTTCC
AACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGCATGGTGAATTGACT
TAGCCATGCCACTCTTGAACACAAGGGTCTGAAGACGACGCTCAAGAAAG
TTCTCCACAGTGAGGGCCAACACATAATCAAGCTTGTTCTGGCTCTCTTC
CAAGAAGCCATACCTGTGCATCCTCCTGAGAAGGGCCTCACCCTCAAAAA
TACGTCGTGGGTTCTTCTCATCGAGAGTGAGAAGATCCCTCGCAGCATTT
CGGATGCGGCTCAGTGCGTATTGAACCCTCCAGAGTTCCCTCTTGCAGCG
AAGCCCATACTCTCCCACAAGTCTCAACTCAGCATCCAATCGCTCCTTCT
CATAGGGACGTCTTGGCTTCTTGAANGTTTTCCCATAGTTGCGGTAGAAT
GAAACGTGCACC
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