DC887266

Overview
NameDC887266
Unique NameDC887266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.420e-32
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = -3
Query:  196 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 471
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_CHICK (60S ribosomal protein L37a OS=Gallus gallus GN=RPL37A PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.079e-32
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_CAEEL (60S ribosomal protein L37a OS=Caenorhabditis elegans GN=rpl-43 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.079e-32
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            M KRTKK GIVGKYGTRYGASLRK  KK+EV+QHS+Y C FCGK A+KRKA GIW C  C KV AGGAY   T +A TVRSTIRRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIRRLRDLKE 91          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_XENLA (60S ribosomal protein L37a OS=Xenopus laevis GN=rpl37a PE=3 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 9.245e-32
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTR+GASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K+ AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_RAT (60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.577e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_PONAB (60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.577e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_MOUSE (60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.577e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_HUMAN (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.577e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_BOVIN (60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.577e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_ICTPU (60S ribosomal protein L37a OS=Ictalurus punctatus GN=rpl37a PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.690e-31
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S I+RL+E  +
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKEMKD 91          
The following BLAST results are available for this feature:
BLAST of DC887266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL43_ASHGO5.420e-3268.4860S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
RL37A_CHICK7.079e-3272.7360S ribosomal protein L37a OS=Gallus gallus GN=RPL... [more]
RL37A_CAEEL7.079e-3271.4360S ribosomal protein L37a OS=Caenorhabditis elega... [more]
RL37A_XENLA9.245e-3271.5960S ribosomal protein L37a OS=Xenopus laevis GN=rp... [more]
RL37A_RAT1.577e-3171.5960S ribosomal protein L37a OS=Rattus norvegicus GN... [more]
RL37A_PONAB1.577e-3171.5960S ribosomal protein L37a OS=Pongo abelii GN=RPL3... [more]
RL37A_MOUSE1.577e-3171.5960S ribosomal protein L37a OS=Mus musculus GN=Rpl3... [more]
RL37A_HUMAN1.577e-3171.5960S ribosomal protein L37a OS=Homo sapiens GN=RPL3... [more]
RL37A_BOVIN1.577e-3171.5960S ribosomal protein L37a OS=Bos taurus GN=RPL37A... [more]
RL37A_ICTPU2.690e-3168.1360S ribosomal protein L37a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionDC887266 EIC Citrus sinensis cDNA clone EIC0110 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887266 ID=DC887266; Name=DC887266; organism=Citrus sinensis; type=EST; length=554bp
CTAGATAACTAATTTCATAGGAAAAATAGCGAATGAACATCTCAAGAGTC
AAAACACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTA
GAAATAAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGA
TCAAACGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTT
CAGTTTGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTA
GCAGTGTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTT
GCAGCCCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTTCCCGCAAA
ATTCGCAGAAATATTTGCTATGCTGACTAACCTCCATCTTCTTAATTTGC
TTCCTCAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGC
CTTCTTCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTC
TTCAACAAGCAGCGGCTGTTTGAGACGTANAGCGACAAAAGAAACCCTAA
CCCC
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