DC887266

Overview
NameDC887266
Unique NameDC887266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_META3 (50S ribosomal protein L37Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.752e-14
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  208 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 459
            TKK G  G++G RYG  +R +++ +E+ Q   Y C  CG   +KR +  IW CK CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGARYGRKVRVRVRDVEIKQKKAYKCPVCGFMKLKRISTSIWECKKCGAKMAGGAYTPETGAGKVVAKAIRRVIE 90          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METJA (50S ribosomal protein L37Ae OS=Methanocaldococcus jannaschii GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            M   TKK G  G++G RYG  +R +++ +E+    KY C  CG   +KR +  IW C  CG   AGGAYT  T +   V   IRR+ E+ E
Sbjct:    1 MFSHTKKVGPTGRFGPRYGLKIRVRVRDVEIKAKKKYKCPVCGFPKLKRASTSIWVCGKCGAKIAGGAYTPETGAGKAVMKAIRRIVERKE 91          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METTH (50S ribosomal protein L37Ae OS=Methanobacterium thermoautotrophicum GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = -3
Query:  214 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 462
            RTKK GI G++G RYG   ++ +KK+E     K+ C  C +  VKR++ GIW C+ CG V  GGAY   T    T    I+R+
Sbjct:    3 RTKKVGITGRFGPRYGRKAKRAVKKIEEEMKRKHVCPSCDRPGVKRESRGIWKCRKCGAVFTGGAYLPVTPMGKTAARNIKRI 85          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_DESK1 (50S ribosomal protein L37Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = -3
Query:  244 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG-KYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASA 462
            +TK  GI G+YGTRYG++LRK+I+ +   ++S + C FCG K  V R + G+W CK CG   AGGAY   T SA
Sbjct:    3 KTKVVGIAGRYGTRYGSTLRKKIRDILEKRYSPHTCPFCGHKGKVYRLSTGVWACKKCGAKWAGGAYMPKTESA 76          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METKA (50S ribosomal protein L37Ae OS=Methanopyrus kandleri GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = -3
Query:  205 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQ 462
            RTKK G  G++G RYG  +R+++ ++E  Q  K+ C  C K AVKR   GIW C  CG    GGAY   T +   VR  IR+  E+
Sbjct:    3 RTKKVGPAGRFGPRYGMRIRRRVAEIESVQRQKHECPVCHKRAVKRVGTGIWRCTKCGAEFTGGAYYPETEAQRIVRRAIRKALEE 88          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METS3 (50S ribosomal protein L37Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = -3
Query:  214 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 462
            RTKK GI G++G RYG   ++ +K +E +    + C  C +  VKR+A GIW C+ CG V  GGAY   T  A +    IR +
Sbjct:    3 RTKKVGITGRFGARYGRKAKRSVKMIEENMKKNHVCPRCDRPYVKRQAAGIWKCRKCGAVFTGGAYVPETPMAKSAARNIRNV 85          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_PYRFU (50S ribosomal protein L37Ae OS=Pyrococcus furiosus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = -3
Query:  232 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 459
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AVKR + GIW C+ CG   AGGAY   T +   VR
Sbjct:    4 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAVR 79          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_PYRAB (50S ribosomal protein L37Ae OS=Pyrococcus abyssi GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = -3
Query:  265 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 459
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW CK CG + AGGAY
Sbjct:    4 TKKVGSAGRFGPRYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVRRISTGIWQCKKCGAIFAGGAY 68          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_PYRHO (50S ribosomal protein L37Ae OS=Pyrococcus horikoshii GN=rpl37ae PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = -3
Query:  232 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 459
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AVKR + GIW C  CG + AGGAY   T +    R
Sbjct:    4 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVKRISTGIWQCTKCGAIFAGGAYLPVTPAGKVAR 79          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METMP (50S ribosomal protein L37Ae OS=Methanococcus maripaludis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  208 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 459
            TKK G  G++G+RYG  +R +++ +E+ Q+  Y C  C    +KR    IW C+ CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQNKDYKCPVCAFPKLKRAGTSIWVCEKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
The following BLAST results are available for this feature:
BLAST of DC887266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_META31.752e-1442.8650S ribosomal protein L37Ae OS=Methanococcus aeoli... [more]
RL37A_METJA2.288e-1440.6650S ribosomal protein L37Ae OS=Methanocaldococcus ... [more]
RL37A_METTH5.096e-1442.1750S ribosomal protein L37Ae OS=Methanobacterium th... [more]
RL37A_DESK15.096e-1450.0050S ribosomal protein L37Ae OS=Desulfurococcus kam... [more]
RL37A_METKA6.656e-1443.0250S ribosomal protein L37Ae OS=Methanopyrus kandle... [more]
RL37A_METS31.135e-1340.9650S ribosomal protein L37Ae OS=Methanobrevibacter ... [more]
RL37A_PYRFU1.937e-1343.4250S ribosomal protein L37Ae OS=Pyrococcus furiosus... [more]
RL37A_PYRAB2.529e-1346.1550S ribosomal protein L37Ae OS=Pyrococcus abyssi G... [more]
RL37A_PYRHO3.303e-1342.1150S ribosomal protein L37Ae OS=Pyrococcus horikosh... [more]
RL37A_METMP3.303e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]

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Properties
Property NameValue
Genbank descriptionDC887266 EIC Citrus sinensis cDNA clone EIC0110 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887266 ID=DC887266; Name=DC887266; organism=Citrus sinensis; type=EST; length=554bp
CTAGATAACTAATTTCATAGGAAAAATAGCGAATGAACATCTCAAGAGTC
AAAACACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTA
GAAATAAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGA
TCAAACGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTT
CAGTTTGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTA
GCAGTGTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTT
GCAGCCCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTTCCCGCAAA
ATTCGCAGAAATATTTGCTATGCTGACTAACCTCCATCTTCTTAATTTGC
TTCCTCAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGC
CTTCTTCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTC
TTCAACAAGCAGCGGCTGTTTGAGACGTANAGCGACAAAAGAAACCCTAA
CCCC
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