DC887266

Overview
NameDC887266
Unique NameDC887266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METM5 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  208 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 459
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C+ CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRAGTSIWVCEKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METVS (50S ribosomal protein L37Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  208 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 459
            TKK G  G++G RYG  +R +++ +E+ Q+ +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGPRYGRKIRVRLRDVEIKQNKEYKCPVCAFPKLKRAGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METM7 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  208 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 459
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_METM6 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  208 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 459
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_THESM (50S ribosomal protein L37Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  265 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 462
            RTKK G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY
Sbjct:    3 RTKKVGSAGRFGPRYGLKIRRRVAAVEEKMRQKHTCPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_ARCFU (50S ribosomal protein L37Ae OS=Archaeoglobus fulgidus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = -3
Query:  223 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 462
            RTKK    G++G RYG  +R+   ++E  Q  KY C+ CGK AVKR   GIW C+ CG   AGG Y   T     V  ++
Sbjct:    3 RTKKVRSAGRFGPRYGLRVRRTWLEIEAVQRQKYVCKKCGKKAVKRSGTGIWECRHCGYKFAGGCYQPVTPGGKIVEKSV 82          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_THEON (50S ribosomal protein L37Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = -3
Query:  265 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 462
            RT K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY
Sbjct:    3 RTTKVGSAGRFGPRYGLKIRRRVAAVEAKMKQKHICPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_THEGJ (50S ribosomal protein L37Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = -3
Query:  223 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 462
            RT K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY   T +    +  +
Sbjct:    3 RTVKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVV 82          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_PYRKO (50S ribosomal protein L37Ae OS=Pyrococcus kodakaraensis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = -3
Query:  226 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNT-ASAVTVRST 462
            RT K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY   T A  V  R T
Sbjct:    3 RTTKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVT 82          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_THEAC (50S ribosomal protein L37Ae OS=Thermoplasma acidophilum GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = -3
Query:  262 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYT 471
            M+KRT K G+ G++G RYG ++RK+  ++   + + Y C  C K  VKR A GIW C+ CG   AGG+YT
Sbjct:    1 MSKRTVKVGVAGRFGPRYGVTIRKEWSEIYKQKIALYTCPSCKKKRVKRVANGIWQCRHCGYKFAGGSYT 70          
The following BLAST results are available for this feature:
BLAST of DC887266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_METM53.303e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METVS5.635e-1340.4850S ribosomal protein L37Ae OS=Methanococcus vanni... [more]
RL37A_METM77.359e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METM67.359e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_THESM9.612e-1345.4550S ribosomal protein L37Ae OS=Thermococcus sibiri... [more]
RL37A_ARCFU1.639e-1242.5050S ribosomal protein L37Ae OS=Archaeoglobus fulgi... [more]
RL37A_THEON2.141e-1243.9450S ribosomal protein L37Ae OS=Thermococcus onnuri... [more]
RL37A_THEGJ2.141e-1237.5050S ribosomal protein L37Ae OS=Thermococcus gammat... [more]
RL37A_PYRKO2.141e-1242.5050S ribosomal protein L37Ae OS=Pyrococcus kodakara... [more]
RL37A_THEAC3.652e-1245.7150S ribosomal protein L37Ae OS=Thermoplasma acidop... [more]

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Properties
Property NameValue
Genbank descriptionDC887266 EIC Citrus sinensis cDNA clone EIC0110 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887266 ID=DC887266; Name=DC887266; organism=Citrus sinensis; type=EST; length=554bp
CTAGATAACTAATTTCATAGGAAAAATAGCGAATGAACATCTCAAGAGTC
AAAACACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTA
GAAATAAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGA
TCAAACGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTT
CAGTTTGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTA
GCAGTGTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTT
GCAGCCCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTTCCCGCAAA
ATTCGCAGAAATATTTGCTATGCTGACTAACCTCCATCTTCTTAATTTGC
TTCCTCAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGC
CTTCTTCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTC
TTCAACAAGCAGCGGCTGTTTGAGACGTANAGCGACAAAAGAAACCCTAA
CCCC
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