DC887265

Overview
NameDC887265
Unique NameDC887265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3988 contig Csv1_Contig3988:54..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887265 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 37/121 (30.58%), Postives = 65/121 (53.72%), Query Frame = -3 
Query:  321 QFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMM--TSGEAVKYKSSLHAFQEIIKNEGTKSLFKG 677
            ++NG+ D  K  ++ +G+AGLY+G   S +G+  Y  + F  Y++LK   +      + + S   G      A   +YPID +RRR+ +    G+ + Y  +  AF++II++EG   L+ G
Sbjct:  277 KYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNG 397
[Close]
BLAST of DC887265 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 42/135 (31.11%), Postives = 69/135 (51.11%), Query Frame = -3 
Query:  300 GGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLL----GWGITIGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 689
            G   Q++G+ D  KK ++ +GI   Y+G+  + +GII Y G+   +Y++LK   L +  +DS     L+    G   +    LASYP+  +R RM    S E     +    F++I+  EG   L++G G N L+
Sbjct:  318 GRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRMQAQASIEGAPQLNMGGLFRKIVAKEGFLGLYRGIGPNFLK 452
The following BLAST results are available for this feature:
BLAST of DC887265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
MCFB_DICDI8.874e-1330.58Mitochondrial substrate carrier family protein B O... [more]
SCM1B_XENLA8.306e-1131.11Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionDC887265 EIC Citrus sinensis cDNA clone EIC0109 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887265 ID=DC887265; Name=DC887265; organism=Citrus sinensis; type=EST; length=697bp
GAAAACTATTTAAATTATTATCACAACACTTGAGTCTAGTGCTCAAGCAC
AAAAACACTCAAATTCAAACAGTTCTTTGACGACTATAATCTTTTCTTTT
ATCAAATCCCTAAAAACCGGATAAATATTAATAACACTATCGATCATCCA
AAATTATTCAAACTTGAGAAGAGCACCTATAGAATTTTCACCAACATCTT
GTACAAGTATTAACCGCCACCACCGGATCCGTATTTCTTGCCAAATAGAA
CCAGCTGCAGCTTGTCATAACCGGCAAGCACACCAGCACCTGCCACAGCA
CGCAGAATGTTTGCACCAGCACCTTTGAAGAGTGATTTAGTGCCTTCATT
CTTTATAATTTCCTGGAATGCATGCAAAGAGCTCTTGTACTTCACAGCTT
CTCCAGAGGTCATCATCATCCTTCTACGCACCGTATCAATTGGGTAAGAA
GCCAAACCAGCACCAATTGTGATTCCCCAGCCAAGTAAGAAGCTAGCCAA
GAAACTATCCTGCATCCCATCAGTCAACACCACAGGTTTTAGAGAATCGT
ACATTCCAAAGTAGAGCCCACGATACACTATAATTCCAACACATGAGATG
CTGAATCCACGGTAGAGCCCAGCAATGCCATCAGATTTCAGAGTCTTCTT
GTAGACATCAATCAAACCATTAAACTGCCTTTCCCCACCCTTTTTAG
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