DC887259

Overview
NameDC887259
Unique NameDC887259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887259_ssr489 microsatellite DC887259_ssr489:489..516. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6351 contig Csv1_Contig6351:42..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  182 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 451
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  182 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 451
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO2_BOVIN (Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  179 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 451
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
The following BLAST results are available for this feature:
BLAST of DC887259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO3_BOVIN4.301e-1954.44Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SMO3L_DANRE4.301e-1954.44Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SUMO2_RAT9.582e-1952.75Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG9.582e-1952.75Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE9.582e-1952.75Small ubiquitin-related modifier 2 OS=Mus musculus... [more]
SUMO2_MACFA9.582e-1952.75Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN9.582e-1952.75Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]
SUMO2_CRIGR9.582e-1952.75Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK9.582e-1952.75Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]
SUMO2_BOVIN9.582e-1952.75Small ubiquitin-related modifier 2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionDC887259 EIC Citrus sinensis cDNA clone EIC0102 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887259 ID=DC887259; Name=DC887259; organism=Citrus sinensis; type=EST; length=569bp
CAGCAACGATCAGGGGCTCTTGAAGAAAGAGCTACATACTTAGGTAACAC
AAACATAATGGTGTAGATCACAAATACACAATCTTGAGCCTCTGCATAAC
TTACATCCATCCATTAATAGTTTTACATTAATACTACTAATAAGCTCTCA
AACGAGCATTACATAATTAGAACATCAGCATTCCTCCGGTTTGGTGCAGC
ATGGCATCAATCTCATCACCATCTTCCATTTCCAGCTCATCAGGGGTTTG
CTCTCCTCGAAGACGGCGGCCATCAAACAAGAAGGCAATTGAGTTCAGCT
CCACAGATTGTCTATCACAGTATGCATTCATAAGCTTCTTTAGTTGGGTG
CTTCGTTTGATCCTGAAGAAAACCTCATTCCCATCCTGGCCCTTGACTTT
GAGATTGATGTGAGCCGATTGATCGTTGGGCTTCTTATCTTCCTCTTGCG
GAGTGTTCGTGACGCCTGACATTCTCTCTTCTGCTTCGTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTATCTCTTGCTCTTTCGATC
TCTTCNTTTGTGTTGTCCC
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