DC887259

Overview
NameDC887259
Unique NameDC887259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887259_ssr489 microsatellite DC887259_ssr489:489..516. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6351 contig Csv1_Contig6351:42..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.451e-16
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = -2 
Query:  182 TNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 460
            T T    D        +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:    4 TETKPSSDGGEKKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of DC887259 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.592e-16
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = -2 
Query:  182 SGVTNTPQEEDKKPNDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 469
            S V    + E K       HINLKV   DG+ E+FF+IK++T L++LM A+  RQ  E++S+ FL+DG R++ +QTP++L+MED D I+A   Q GG
Sbjct:    4 SEVNQEAKPEVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98
The following BLAST results are available for this feature:
BLAST of DC887259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE4.451e-1645.16Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SMT3_YEAST7.592e-1645.36Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionDC887259 EIC Citrus sinensis cDNA clone EIC0102 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887259 ID=DC887259; Name=DC887259; organism=Citrus sinensis; type=EST; length=569bp
CAGCAACGATCAGGGGCTCTTGAAGAAAGAGCTACATACTTAGGTAACAC
AAACATAATGGTGTAGATCACAAATACACAATCTTGAGCCTCTGCATAAC
TTACATCCATCCATTAATAGTTTTACATTAATACTACTAATAAGCTCTCA
AACGAGCATTACATAATTAGAACATCAGCATTCCTCCGGTTTGGTGCAGC
ATGGCATCAATCTCATCACCATCTTCCATTTCCAGCTCATCAGGGGTTTG
CTCTCCTCGAAGACGGCGGCCATCAAACAAGAAGGCAATTGAGTTCAGCT
CCACAGATTGTCTATCACAGTATGCATTCATAAGCTTCTTTAGTTGGGTG
CTTCGTTTGATCCTGAAGAAAACCTCATTCCCATCCTGGCCCTTGACTTT
GAGATTGATGTGAGCCGATTGATCGTTGGGCTTCTTATCTTCCTCTTGCG
GAGTGTTCGTGACGCCTGACATTCTCTCTTCTGCTTCGTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTATCTCTTGCTCTTTCGATC
TCTTCNTTTGTGTTGTCCC
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