FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.703e-39
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSI+FMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDELFL+ RGG+EIYVGP+G HS  LI YFE I G
Sbjct:  984 AVELVANPSILFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLLTRGGEEIYVGPIGHHSSQLIEYFEGIRG 1074          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.471e-39
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQ IY G LGR+S  +I YFEAIPG
Sbjct: 1062 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPG 1152          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.442e-38
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKRGGQ IY G LG HS  L+ YFEAI G
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEG 1105          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.883e-38
Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKRGGQ IY G LG HS  L+ YFEA+ G
Sbjct: 1016 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEG 1106          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.459e-38
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGGQ IY GPLG +S  ++ YFEAIPG
Sbjct: 1071 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGTNSHKVVEYFEAIPG 1161          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.459e-38
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ IY GPLG++S  ++ YFE+ PG
Sbjct: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPG 1120          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.211e-38
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQ IY GPLG++S  +I YF+AI G
Sbjct:  977 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHG 1067          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.478e-38
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG  IY GPLGR+S  ++ YFE+ PG
Sbjct: 1003 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPG 1093          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.344e-38
Identity = 78/91 (85.71%), Postives = 79/91 (86.81%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVR TVDTGRTVVCTIHQPSIDIFEAFDEL LMK GGQ IY GPLG  S  L+ YFE IPG
Sbjct: 1022 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLLMKIGGQVIYAGPLGHRSHKLVEYFETIPG 1112          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.220e-37
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FDEL L+KRGG+ IY G LG HS  L+ YFEAIPG
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFDELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPG 1105          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AB38G_ARATH1.703e-3985.71ABC transporter G family member 38 OS=Arabidopsis ... [more]
PDR12_ORYSJ6.471e-3987.91Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
AB34G_ARATH1.442e-3886.81ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH1.883e-3885.71ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR15_ORYSJ2.459e-3885.71Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB36G_ARATH2.459e-3884.62ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB29G_ARATH3.211e-3885.71ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB35G_ARATH5.478e-3884.62ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR2_NICPL9.344e-3885.71Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR5_ORYSJ1.220e-3784.62Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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