FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: SNQ2_YEAST (Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.957e-19
Identity = 40/87 (45.98%), Postives = 66/87 (75.86%), Query Frame = -2
Query:   14 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELVA P ++ F+DEPTSGLD++++  +++ +R     G++++CTIHQPS  +FE FD L L+++GGQ +Y G +G++S  +++YFE
Sbjct: 1005 VELVAKPDLLLFLDEPTSGLDSQSSWAIIQLLRKLSKAGQSILCTIHQPSATLFEEFDRLLLLRKGGQTVYFGDIGKNSATILNYFE 1091          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.957e-19
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = -2
Query:   14 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELVA P I+F+DEPTSGLD +++  +++ +R   D G  +VCTIHQPS  +FE FD + L+ +GG+ +Y G +G  S  L SYFE
Sbjct:  973 VELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILLLAKGGKTVYFGDIGEGSKTLTSYFE 1058          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.339e-19
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -2
Query:   14 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELVA P I+F+DEPTSGLD +++  +++ +R   D G  +VCTIHQPS  +FE FD + L+ +GG+ +Y G +G  S  L SYF+
Sbjct:  998 VELVAKPHILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILLLAKGGKTVYFGDIGEKSKTLTSYFQ 1083          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: BFR1_SCHPO (Brefeldin A resistance protein OS=Schizosaccharomyces pombe GN=bfr1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 41/88 (46.59%), Postives = 65/88 (73.86%), Query Frame = -2
Query:   11 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 271
            VEL A P+++ F+DEPTSGLD+++A  ++  +R   D G+ ++CTIHQPS  +F+ FD L L+++GG+ +Y G +G HS  L++YFE+
Sbjct: 1035 VELAAKPALLLFLDEPTSGLDSQSAWSIVCFLRKLADAGQAILCTIHQPSAVLFDQFDRLLLLQKGGKTVYFGDIGEHSKTLLNYFES 1122          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = -2
Query:    8 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 271
            VEL +NP I+F+DEPTSGLD+  A  V+  V        RTV+CT+HQPS  IFE FD+L L+K+GG+ IY GPLG  S  ++ Y + +
Sbjct: 1052 VELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAKVMNRTVICTVHQPSAAIFEFFDQLLLLKKGGETIYFGPLGNQSSVILDYCDKL 1140          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = -2
Query:    8 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 271
            VEL +NP I+F+DEPTSGLD+  A  V+  V        RTV+CT+HQPS  IFE FD+L L+K+GG+ IY GPLG  S  ++ Y + +
Sbjct: 1077 VELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAKVMNRTVICTVHQPSAAIFEFFDQLLLLKQGGETIYFGPLGNQSSVILDYCDKL 1165          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.714e-19
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = -2
Query:   14 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELV  P ++ F+DEPTSGLD+++A  V++ ++     G++++CTIHQPS  +FE FD L L+ +GGQ IY G +G++S  +I YFE
Sbjct:  881 VELVGKPDLLLFLDEPTSGLDSQSAWAVVKMLKRLALAGQSILCTIHQPSATLFEQFDRLLLLGKGGQTIYFGEIGKNSSSVIKYFE 967          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.714e-19
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = -2
Query:   14 VELVANPSI-IFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELVA P + +F+DEPTSGLD++ A  + + +R   D G+ ++CTIHQPS  +   FD L  ++RGGQ +Y G LG++   LI+YFE
Sbjct: 1000 VELVAKPKLLVFLDEPTSGLDSQTAWSICKLIRKLADNGQAILCTIHQPSAILLAEFDRLLFLQRGGQTVYFGDLGKNFTTLINYFE 1086          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.714e-19
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = -2
Query:   17 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 271
            +EL ++P +IF+DEPTSGLD+ AA  VM  V+   ++GRTVVCTIHQPS +IFE FD+L L+ + G+ IY G  G +S  +I +F
Sbjct:  947 IELASDPHLIFLDEPTSGLDSSAALKVMNCVKKIAESGRTVVCTIHQPSQEIFEKFDQLLLLDK-GKVIYFGDTGDNSSTVIQHF 1030          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: CDR2_CANAL (Multidrug resistance protein CDR2 OS=Candida albicans GN=CDR2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.551e-16
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -2
Query:   14 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELVA P ++ F+DEPTSGLD++ A  + + +R   D G+ ++CTIHQPS  I   FD+L  +++GG+  Y G LG +   +I+YFE
Sbjct: 1011 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSALIMAEFDKLLFLQKGGRTAYFGELGENCQTMINYFE 1097          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
SNQ2_YEAST1.957e-1945.98Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 P... [more]
ABCGJ_DICDI1.957e-1950.00ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCGF_DICDI3.339e-1948.84ABC transporter G family member 15 OS=Dictyosteliu... [more]
BFR1_SCHPO4.361e-1946.59Brefeldin A resistance protein OS=Schizosaccharomy... [more]
ABCG5_DICDI4.361e-1950.56ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCG6_DICDI5.695e-1950.56ABC transporter G family member 6 OS=Dictyostelium... [more]
YN99_YEAST9.714e-1948.28Uncharacterized ABC transporter ATP-binding protei... [more]
CDR4_CANAL9.714e-1948.28ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
ABCG3_DICDI9.714e-1952.94ABC transporter G family member 3 OS=Dictyostelium... [more]
CDR2_CANAL1.551e-1645.98Multidrug resistance protein CDR2 OS=Candida albic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
back to top