FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: CDR1_CANAL (Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.026e-16
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = -2
Query:   14 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VELVA P ++ F+DEPTSGLD++ A  + + +R   D G+ ++CTIHQPS  I   FD L  +++GG+  Y G LG +   +I+YFE
Sbjct: 1013 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSALIMAEFDRLLFLQKGGRTAYFGELGENCQTMINYFE 1099          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR5_YEAST (Pleiotropic ABC efflux transporter of multiple drugs OS=Saccharomyces cerevisiae GN=PDR5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.512e-16
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = -2
Query:   11 VELVANPSI-IFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 271
            VEL A P + +F+DEPTSGLD++ A  + + ++   + G+ ++CTIHQPS  + + FD L  M+RGG+ +Y G LG     +I YFE+
Sbjct: 1022 VELTAKPKLLVFLDEPTSGLDSQTAWSICQLMKKLANHGQAILCTIHQPSAILMQEFDRLLFMQRGGKTVYFGDLGEGCKTMIDYFES 1109          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR10_YEAST (ATP-dependent permease PDR10 OS=Saccharomyces cerevisiae GN=PDR10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.697e-16
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = -2
Query:   11 VELVANPSI-IFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 271
            VEL A P + +F+DEPTSGLD++ A    + ++     G+ ++CTIHQPS  + + FD L  ++ GGQ +Y G LG+    +I+YFEA
Sbjct: 1076 VELAAKPKLLVFLDEPTSGLDSQTAWSTCQLMKKLASRGQAILCTIHQPSALLMQEFDRLLFLQEGGQTVYFGELGKGCKTMINYFEA 1163          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.005e-15
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = -2
Query:   14 VELVANPSI-IFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 271
            VEL A P + +F+DEPTSGLD++ A    + ++   + G+ ++CTIHQPS  + + FD L  +++GGQ +Y G LG+    +I YFE
Sbjct: 1038 VELAAKPKLLVFLDEPTSGLDSQTAWATCQLMKKLANHGQAILCTIHQPSAMLMQEFDRLLFLQKGGQTVYFGDLGKGCKTMIKYFE 1124          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.005e-15
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = -2
Query:   14 AVELVANPSI-IFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 274
            AVELVA P + +F+DEPTSGLD++ A  + + +R   + G+ ++CTIHQPS  + E FD L L+++ G+ +Y G  G +   LI YFE
Sbjct:  993 AVELVARPKLLVFLDEPTSGLDSQTAWSICKLIRKLANHGQAILCTIHQPSAILLEEFDRLLLLQK-GETVYFGEFGANCHTLIEYFE 1079          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR15_YEAST (ATP-dependent permease PDR15 OS=Saccharomyces cerevisiae GN=PDR15 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.715e-15
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = -2
Query:   11 VELVANPSI-IFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 271
            VEL A P + +F+DEPTSGLD++ A    + +R     G+ ++CTIHQPS  + + FD L  +++GGQ +Y G LG     +I YFE+
Sbjct: 1037 VELAARPKLLVFLDEPTSGLDSQTAWDTCQLMRKLATHGQAILCTIHQPSAILMQQFDRLLFLQKGGQTVYFGDLGEGCKTMIDYFES 1124          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.715e-15
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = -2
Query:   20 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISY 274
            A+E+ + P I+F+DEPT+GL + AA ++M+ ++     GR+V+CTIHQPS  IF+ FD + L+ +GG   Y G LG +   +++Y
Sbjct:  995 AIEMASLPDILFLDEPTTGLTSVAAELIMQLIKRVALDGRSVICTIHQPSETIFKKFDSILLLTQGGFVAYFGELGPNCRTVLNY 1079          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.111e-14
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = -2
Query:   56 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 274
            A+E++  P I+F+DEPTSGLD+ +A  V++ +RN    GRTV+ ++HQPS ++F  FD+LFL+   G+ +Y G
Sbjct:  180 ALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLS-SGESVYFG 251          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.111e-14
Identity = 35/73 (47.95%), Postives = 55/73 (75.34%), Query Frame = -2
Query:   56 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 274
            A+E++  PS++F+DEPTSGLD+ +A  V++ +RN   +G+TVV +IHQPS ++F  FD+L L+  GG+ +Y G
Sbjct:  165 ALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLS-GGETVYFG 236          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AUS1_YEAST (ATP-dependent permease AUS1 OS=Saccharomyces cerevisiae GN=AUS1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.452e-14
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = -2
Query:   50 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 271
            VELV  PS++ F+DEPTSGLD  AA  +++ ++     G+ + CTIHQPS  +   FD +FL+KRGG+ ++ GP+
Sbjct:  889 VELVTKPSLLLFLDEPTSGLDAEAALTIVKFLKQLSLQGQAIFCTIHQPSKSVISHFDNIFLLKRGGECVFFGPM 963          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
CDR1_CANAL2.026e-1645.98Multidrug resistance protein CDR1 OS=Candida albic... [more]
PDR5_YEAST4.512e-1643.18Pleiotropic ABC efflux transporter of multiple dru... [more]
PDR10_YEAST7.697e-1643.18ATP-dependent permease PDR10 OS=Saccharomyces cere... [more]
PDH1_CANGA1.005e-1542.53ATP-binding cassette transporter CGR1 OS=Candida g... [more]
CDR3_CANAL1.005e-1545.45Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
PDR15_YEAST1.715e-1543.18ATP-dependent permease PDR15 OS=Saccharomyces cere... [more]
ABCGG_DICDI1.715e-1542.35ABC transporter G family member 16 OS=Dictyosteliu... [more]
AB15G_ARATH1.111e-1446.58ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB13G_ARATH1.111e-1447.95ABC transporter G family member 13 OS=Arabidopsis ... [more]
AUS1_YEAST1.452e-1446.67ATP-dependent permease AUS1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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