FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.452e-14
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = -2
Query:   20 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISY 274
            A+ELV NP ++F DEPTSGLD+ +   V+  ++     GR+++CTIHQPS  +FE FD+L+++ + GQ +Y G +    C+L+ Y
Sbjct:  228 ALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQ-GQCVYRGKV----CNLVPY 307          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR11_YEAST (ATP-dependent permease PDR11 OS=Saccharomyces cerevisiae GN=PDR11 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.234e-14
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = -2
Query:   50 VELVANPSII-FMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 271
            VELV  PS++ F+DEPTSGLD  AA  +++ ++     G+ ++CTIHQPS  +   FD ++L+KRGG+ +Y G L
Sbjct:  889 VELVTKPSLLLFLDEPTSGLDAEAALTIVQFLKKLSMQGQAILCTIHQPSKSVISYFDNIYLLKRGGECVYFGSL 963          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.234e-14
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = -2
Query:   56 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 274
            A+E++  P I+F+DEPTSGLD+ +A  V++ +RN   D GRTVV +IHQPS ++F  FD+LFL+   G+ +Y G
Sbjct:  179 ALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLS-SGETVYFG 251          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.234e-14
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = -2
Query:   56 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 274
            A+E++  P ++F+DEPTSGLD+ +A  V +T+R     GRTV+ +IHQPS ++FE FD L+L+  GG+ +Y G
Sbjct:  204 ALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFG 275          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.224e-14
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = -2
Query:    8 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 274
            A+ELV NP ++F DEPTSGLD+ +   V+  +++    GRT++CTIHQPS  +FE FD+L+++ + GQ I+ G +     +LI Y + +
Sbjct:  212 ALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQ-GQCIFKGVV----TNLIPYLKGL 295          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.204e-14
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -2
Query:   17 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 274
            A EL+A+PS+IF DEPT+GLD   A  VM T++     G TV+C+IHQP   ++  FD++ L+   G  +Y GP G+     ++YF
Sbjct:  227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIVLLTE-GTLVYAGPAGKEP---LTYF 308          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.409e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = -2
Query:   56 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 274
            A+ELV NP ++F DEPTSGLD+ +   V+  ++     GR++VCTIHQPS  +FE FD+L+++ + GQ +Y G
Sbjct:  228 ALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFELFDQLYVLSQ-GQCVYRG 299          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.096e-13
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2
Query:   11 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 274
            ++EL+  PS+I +DEPTSGLD   +  VM  ++    +GRT++CTIHQP  +I++ FD L L+   G  IY G   +     + YF A
Sbjct:  275 SIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLL-GDGNTIYYGKANK----ALEYFNA 357          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.575e-13
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = -2
Query:    8 LVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 265
            LV NPS+IF+DEPTSGLD+ AA  +M+T+ N    G TV+C+IHQP  +IF  F+++ ++ + G+ IY G       +++ YFE++
Sbjct:  215 LVTNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFALFNKVMVIIK-GKMIYSG------SNILEYFESL 293          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.670e-13
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = -2
Query:    8 ELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 268
            E++ NPS++ +DEPTSGLD+  AA ++ T+R+    GRTVV TIHQPS  ++  FD++ ++   G  IY G  GR    ++ YF +I
Sbjct:  235 EMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLYRMFDKVLVLSE-GCPIYSGDSGR----VMEYFGSI 316          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ABCG1_HUMAN1.452e-1443.53ATP-binding cassette sub-family G member 1 OS=Homo... [more]
PDR11_YEAST3.234e-1446.67ATP-dependent permease PDR11 OS=Saccharomyces cere... [more]
AB12G_ARATH3.234e-1450.00ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB11G_ARATH3.234e-1447.95ABC transporter G family member 11 OS=Arabidopsis ... [more]
ABCG4_HUMAN4.224e-1442.70ATP-binding cassette sub-family G member 4 OS=Homo... [more]
AB7G_ARATH7.204e-1443.02ABC transporter G family member 7 OS=Arabidopsis t... [more]
ABCG1_MOUSE9.409e-1447.95ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
ABCG1_DICDI2.096e-1340.91ABC transporter G family member 1 OS=Dictyostelium... [more]
ABCGC_DICDI3.575e-1344.19ABC transporter G family member 12 OS=Dictyosteliu... [more]
AB21G_ARATH4.670e-1343.68ABC transporter G family member 21 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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