FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = -2
Query:    8 LVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 265
            L+ NPS+IF+DEPTSGLD+ AA  +M+T+ N    G TV+C+IHQP  +IF+  +++ ++ + G+ IY G       +++ YFE++
Sbjct:  214 LITNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFQLINKVMVIIK-GKMIYSG------SNILEYFESL 292          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.027e-12
Identity = 28/76 (36.84%), Postives = 52/76 (68.42%), Query Frame = -2
Query:   44 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 271
            +E+V  PS++F+DEPTSGLD+ ++ +++R +R+    G  +   +HQPS  +F+ F++L L+ +GG  +Y G + +
Sbjct:  630 LEMVMEPSVLFLDEPTSGLDSASSQLLLRALRHEALEGVNICMVVHQPSYTLFKTFNDLVLLAKGGLTVYHGSVNK 705          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.163e-12
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -2
Query:    8 ELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 268
            E++ NPS++ +DEPTSGLD+  A   +  + +  + G+TV+ TIHQPS  +F  FD+L L+ RG   +Y G     S   + YF +I
Sbjct:  316 EIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSL-LYFG----KSSEALDYFSSI 397          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.163e-12
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -2
Query:    8 ELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 268
            E++ NPS++ +DEPTSGLD+  A  ++ T++     GRTVV TIHQPS  I+  FD++ L+   G  IY G     +   + YF ++
Sbjct:  217 EMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSE-GSPIYYGA----ASSAVEYFSSL 298          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.743e-12
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = -2
Query:   50 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 271
            +E+V  PS++ +DEPTSGLD+ ++ +++R +R     G  +   +HQPS  +F  FD+L L+ +GG   Y GP+
Sbjct:  652 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPV 725          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.807e-12
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = -2
Query:    2 AVELVANP-SIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVEL A P SI+ +DEP +GLD+++A +++  ++    +G +++C++ QPS  I E FD + ++   G  +Y   +GR    L++YF+ I G
Sbjct:  910 AVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFDMMLILDLNGNTVYYDTMGRDLSKLVNYFKRIHG 1001          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.807e-12
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -2
Query:    5 LVANPSIIFMDEPTSGLDTRAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIP 265
            LV NPS++F+DEPTSGLD+  A  VM+ + N TV  G TV+C+IHQP  +I+  F+++ +M + G+ IY G        +++Y  ++P
Sbjct:  398 LVTNPSLLFLDEPTSGLDSLNALKVMKVLMNLTVIKGVTVICSIHQPRPEIYHLFNKIMIMLK-GRMIYCGN------DVLNYLSSLP 478          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.150e-11
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = -2
Query:    8 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 274
            A+EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L L+   G+ ++ GP    +   + YF AI
Sbjct:  196 AMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AQEALGYFGAI 279          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB26G_ARATH (ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.502e-11
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = -2
Query:   62 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 274
            A E++ +PS++ +DEPTSGLD+ +A  ++  ++     GRTV+ TIHQPS  +F  FD+L L+  G    Y
Sbjct:  248 AYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGHPAFY 318          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.962e-11
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = -2
Query:    8 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 274
            A+EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L L+   G+ ++ GP    +   + YF +I
Sbjct:  197 AMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AREALGYFASI 280          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ABCG8_DICDI1.040e-1241.86ABC transporter G family member 8 OS=Dictyostelium... [more]
AB24G_ARATH3.027e-1236.84ABC transporter G family member 24 OS=Arabidopsis ... [more]
AB22G_ARATH5.163e-1240.23ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB14G_ARATH5.163e-1240.23ABC transporter G family member 14 OS=Arabidopsis ... [more]
AB28G_ARATH6.743e-1239.19ABC transporter G family member 28 OS=Arabidopsis ... [more]
PDR1_SCHPO8.807e-1235.87ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
ABCG7_DICDI8.807e-1242.05ABC transporter G family member 7 OS=Dictyostelium... [more]
ABCG2_BOVIN1.150e-1140.45ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
AB26G_ARATH1.502e-1142.25ABC transporter G family member 26 OS=Arabidopsis ... [more]
ABCG2_PIG1.962e-1139.33ATP-binding cassette sub-family G member 2 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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