FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.562e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = -2
Query:   53 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 274
            A E++  P I+F DEPTSGLD   A  V++ +R+  D G TV+ TIHQPS  ++  F+ + LM   G+ IY+GP
Sbjct:  148 ASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLM-ACGRVIYLGP 220          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = -2
Query:   77 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVR----NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 274
            A EL+ +PSI+F+DEPTSGLD+ +A+ ++  ++    N+    RT++ +IHQPS ++FE FD L L+ +G
Sbjct:  614 ATELIVDPSILFIDEPTSGLDSHSASELITKLKQLANNSTKGQRTIIFSIHQPSAELFEQFDNLILLHQG 683          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = -2
Query:   11 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 271
            +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L L+   G+ ++ GP    +   + YFE+
Sbjct:  198 MELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AQEALGYFES 279          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = -2
Query:   11 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 271
            +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L L+   G+ ++ GP    +   + YFE+
Sbjct:  198 MELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AQEALGYFES 279          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.371e-11
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = -2
Query:   77 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 274
            A E + +P ++  DEPTSGLD+  AA V++ ++     G+TV+ TIHQPS ++FE FD++ LM  G
Sbjct:  241 ASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQRGKTVILTIHQPSSELFELFDKILLMAEG 306          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.371e-11
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = -2
Query:   17 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 274
            AVEL+ NP I+F DEPT+GLD+ +A  ++ T+      G T++CTIHQPS  +F+ F+ + L+  G       P      H +S+F
Sbjct:  227 AVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQ-----HALSFF 307          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG8_HUMAN (ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.371e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2
Query:    8 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 271
            V+L+ NP I+ +DEPTSGLD+  A  +++T+       R V+ ++HQP  DIF  FD L L+   G  IY+G     + H++ YF AI
Sbjct:  225 VQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLGA----AQHMVQYFTAI 307          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.371e-11
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = -2
Query:   53 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 271
            +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L L+   G+ ++ GP
Sbjct:  197 MELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGKLVFHGP 268          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.708e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2
Query:    8 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 271
            V+L+ NP I+ +DEPTSGLD+  A  ++RT+       R V+ ++HQP  DIF  FD L L+   G  IY+G     + H++ YF +I
Sbjct:  247 VQLLWNPGILILDEPTSGLDSFTAHNLVRTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLGV----AQHMVQYFTSI 329          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = -2
Query:   56 LVANPSIIFMDEPTSGLDTRAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 265
            LV +PSI+ +DEPTSGLDT +A  VM+T V  T     TV+CTIHQP  +IF+ F ++ ++   G+ +Y G
Sbjct:  192 LVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQKSVTVICTIHQPRSEIFKLFTKIMVLAE-GRLVYYG 261          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
WHT1_CAEEL2.562e-1145.95ABC transporter ATP-binding protein/permease wht-1... [more]
ABCGO_DICDI3.347e-1144.29ABC transporter G family member 24 OS=Dictyosteliu... [more]
ABCG2_MACMU3.347e-1139.08ATP-binding cassette sub-family G member 2 OS=Maca... [more]
ABCG2_HUMAN3.347e-1139.08ATP-binding cassette sub-family G member 2 OS=Homo... [more]
WHITE_LUCCU4.371e-1145.45Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
SCRT_DROME4.371e-1139.53Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
ABCG8_HUMAN4.371e-1140.91ATP-binding cassette sub-family G member 8 OS=Homo... [more]
ABCG2_MOUSE4.371e-1142.47ATP-binding cassette sub-family G member 2 OS=Mus ... [more]
ABCG8_RAT5.708e-1140.91ATP-binding cassette sub-family G member 8 OS=Ratt... [more]
ABCGM_DICDI7.455e-1147.89ABC transporter G family member 22 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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