FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = -2
Query:   53 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 271
            +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L L+   G+ ++ GP
Sbjct:  197 MELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGKLMFHGP 268          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = -2
Query:    8 ELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 268
            E++ NPS++ +DEPTS LD+  A  +++ +      G+T+V TIHQPS  +F  FD+L ++ RG   +Y G     +   +SYF +I
Sbjct:  304 EIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFDKLVVLSRGSL-LYFG----KASEAMSYFSSI 385          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 25/72 (34.72%), Postives = 48/72 (66.67%), Query Frame = -2
Query:   56 VELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 271
            VE+V  PS++ +DEPT+GLD+ ++ +++R +R     G  +   +HQPS  +++ FD++ ++ +GG  +Y G
Sbjct:  618 VEMVMEPSLLILDEPTTGLDSASSQLLLRALRREALEGVNICMVVHQPSYTMYKMFDDMIILAKGGLTVYHG 689          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = -2
Query:    8 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAI 274
            A EL+ NPS++ +DEPTSGLD  AA  +++T+       G+TVV +IHQPS  +F+ FD + L+   G+ ++VG  GR +   ++YFE++
Sbjct:  218 AHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSE-GKCLFVGK-GRDA---MAYFESV 302          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ABCG2_RAT7.455e-1142.47ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
AB27G_ARATH7.455e-1137.93ABC transporter G family member 27 OS=Arabidopsis ... [more]
WBC30_ARATH9.737e-1134.72Putative white-brown complex homolog protein 30 OS... [more]
AB25G_ARATH9.737e-1142.22ABC transporter G family member 25 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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