CX676549

Overview
NameCX676549
Unique NameCX676549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.429e-25
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  307 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLT 774
            E+  L++ ++  +G+ L +     R FFE    +MR+NYYPPC +P + +G  PH D   LTIL Q N V GLQ+  +  W  + P  +AFVVN+GD    ++NG+Y+S  HRA VNS   R S+A F     D  V P  +L+    P  +   T
Sbjct:  170 EMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFT 324          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.231e-24
Identity = 57/149 (38.26%), Postives = 91/149 (61.07%), Query Frame = -1
Query:  334 LKSLAMNLILKMGKVLNIKDQEMRNFFENGMQV---MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISEN 771
            L+ LA  L+  + + L ++   ++N F          +++ YPPCP+P+ + GL  H+D  G+ +L Q ++V GLQ+ KD  WI + P+ ++ VVN+GD +E+ITNGKY+S+ HR    +   R S+A+FY    D  +YPA SLI E+
Sbjct:  121 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGNDAVIYPAPSLIEES 269          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.231e-24
Identity = 57/151 (37.75%), Postives = 92/151 (60.93%), Query Frame = -1
Query:  337 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVM-----RMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 774
            EL+ LA  L+  + + L ++   ++  F  G   +     +++ YPPCP+P+ + GL  H+D  G+ +L Q ++V GLQ+ KDR WI + PL  + VVN+GD +E+ITNGKY+S+ HR    +   R SIA+FY    D  ++PA +L+ +
Sbjct:  122 ELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEK 272          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.231e-24
Identity = 56/153 (36.60%), Postives = 95/153 (62.09%), Query Frame = -1
Query:  337 SMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVM-----RMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 780
            ++EL++LA  L+  + + L ++   ++  F  G   +     +++ YPPCP+PE + GL  H+D  G+ +L Q ++V GLQ+ KD  WI + P+ ++ VVN+GD +E+ITNGKY+S+ HR    +   R SIA+FY    D  ++PA +L+ +
Sbjct:  120 ALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEK 272          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = -1
Query:  325 RMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPS 669
            +++ YPPCP+PE + GL  H+D  G+ +L Q ++V GLQ+ KD  WI + P+ ++ V+N+GD +E+ITNGKY+S+ HR    +   R SIA+FY    D  + PAS+L+ EN  S
Sbjct:  158 KVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGDDAVISPASTLLKENETS 272          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.112e-24
Identity = 49/111 (44.14%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  337 RMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 669
            +++ YPPCP+PE + GL  H+D  G+ +L Q N+V GLQ+ KD  WI + P+ ++ V+N+GD +E+ITNGKY+S+ HR        R SIA+FY    D  +YPA +L+ +
Sbjct:  158 KVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDK 268          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 55/153 (35.95%), Postives = 91/153 (59.48%), Query Frame = -1
Query:  337 SMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVM-----RMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 780
            ++ L+ LA  L+  + + L ++   ++  F  G   +     +++ YPPCP+PE + GL  H+D  G+ +L Q + V GLQ+ KD  WI + P+ ++ VVN+GD +E+ITNGKY+S+ HR    +   R SIA+FY    D  ++PA  L+ +
Sbjct:  114 ALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEK 266          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 54/148 (36.49%), Postives = 90/148 (60.81%), Query Frame = -1
Query:  337 LKSLAMNLILKMGKVLNIKDQEMRNFFENGMQV---MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 771
            L+ LA  L+  + + L ++   ++N F          +++ YPPCP+P+ + GL  H+D  G+ +L Q ++V GLQ+ KD  WI + P+ ++ VVN+GD +E+ITNGKY+S+ HR    +   R S+A+FY    D  +YPA +L+ +
Sbjct:  121 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAKTLVEK 268          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 54/149 (36.24%), Postives = 93/149 (62.42%), Query Frame = -1
Query:  337 ELKSLAMNLILKMGKVLNIKDQEMRNFF--ENGMQV-MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 774
            +++ L+  L+  + + L ++   ++N F   NG     +++ YPPCP+P+ + GL  H+D  G+ +L Q ++V GLQ+ KD  W+ + P+ ++ VVN+GD +E+ITNGKY+S+ HR    +   R SIA+FY    D  +YPA +L+ +
Sbjct:  126 QIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSIASFYNPGSDAVIYPAPTLVEK 274          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.322e-23
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = -1
Query:  337 LKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 771
            + SL++ ++  +G  L +     R FFE    +MR+N+YPPC  P+  +G  PH D   LTIL Q + V GLQ+  D  W  + P P AFVVN+GD    ++NG ++S  HRA VN    R S+A F   + D  V P S ++ +
Sbjct:  192 MSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQ-DHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEK 335          
The following BLAST results are available for this feature:
BLAST of CX676549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GAO1D_WHEAT9.429e-2538.46Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
ACCO4_SOLLC1.231e-2438.261-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO2_DORSP1.231e-2437.751-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP1.231e-2436.601-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_PEA2.743e-2444.351-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO_ACTDE6.112e-2444.141-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO_DENCR7.982e-2435.951-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO1_SOLLC1.362e-2336.491-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO_DIACA1.778e-2336.24Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
GAOX2_ARATH2.322e-2338.62Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70F04-K8-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676549 ID=CX676549; Name=CX676549; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTCAATGAAGTGGTTAAATTGCCAAAAAGCATTTGAA
TAACATTGTCAAGTACATGTGTATCACTTGCAATCTCATGATAAGCACAC
AAGAATTCAATTTCAAGAAAGACAGATACTGATCCGGTATAAGCACATAT
CATCATGAGCATGTTGTATTCTCAGTTTCTGTGCCACACTCCTTAATCCA
AAATAAACTTATAATACTAGCCTCGACCGTGTTGAATTCTCAAGACATCC
AGATAAGATTTTCCACTAAGCTCACGAGCGAGCCGGCGCCGGAGGTACTC
TTCAACTGTCAATCTTCTAAACAATGAAGGTGTATTTTCAGAGATCAAAC
TGGATGCTGGGTATACTTCACCATCGTATCTCGCGTAGTAAAATGCGGCA
ATGGAGTGTCTTTCATGTACAGAGTTTACAGTTGCACGATGCTCAATACT
ACGGTATTTTCCATTGGTTATAATCTCCATAATGTCTCCAACGTTGACGA
CGAAGGCATTTGGGAGGGGAGTAAGAGGAATCCACATTCTATCTTTCTTT
ATCTGCAGACCTTCTACTTCATTGATCTGTAGCAGAATGGTAAGACCACA
GCCATCAGAATGAGGCGTAAGACCCACAACCTTCTCCGGCTGAGGGCATG
GAGGGTAATAGTTCATCCTCATTACTTGCATTCCATTTTCAAAGAAGTTT
CTCATTTCTTGATCTTTGATATTTAAAACTTTTCCCATTTTCAATATCAG
ATTCATGGCTAGAGATTTTAACTCCATTGA
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