CX676549

Overview
NameCX676549
Unique NameCX676549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17
Identity = 50/125 (40.00%), Postives = 74/125 (59.20%), Query Frame = -1
Query:  310 MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDR----MWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRL 672
            +++N YP CP P   +GL PH+D   LTIL Q N + GL+I+  +     WI + P+  + VV +GD+  II+NG++RS  HRA VN  H R S A F     + ++ P +S   +N P ++RRL
Sbjct:  206 LQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGN-IPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTS--DKNHPPIYRRL 327          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = -1
Query:  235 ELKSLAMNLILKMGKVLNIKDQEM------RNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKK---DRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 774
            E+++LA  L+      L +  +++      +   E     M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+ +   DR W+ +  +P A VVNVGD+ +I+TNG++ S+ HRA VN   +R S+  F       +V P    ++  TP+ +R +T             +G S L ++ I
Sbjct:  169 EMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDR-WVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAI 354          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = -1
Query:  235 MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHE-RHSIAAFY---YARYDGEVY-PASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 672
            M  + +PPCP+P +  G   H+D   LTILL  N   GLQ+  D  WI + P P A + NVGD +++I+N K+ S+EHR   N   E R S+A F+   +      VY P   L+SE  P  +R  T             +G S LD LRI
Sbjct:  211 MLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSRVYGPIKELLSELNPPKYRD-TTSESSNHYVARKPNGNSSLDHLRI 359          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.236e-17
Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = -1
Query:  235 ELKSLAMNLILKMGKVLNIKDQEM------RNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKK---DRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 774
            E+++LA  L+      L +  +++      +   E     M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+ +   DR W+ +  +P A VVNVGD+ +I+TNG++ S+ HRA VN   +R S+  F       +V P    ++  TP+ +R +T             +G S L ++ I
Sbjct:  169 EMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDR-WVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAI 354          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.451e-17
Identity = 52/149 (34.90%), Postives = 82/149 (55.03%), Query Frame = -1
Query:  235 MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKK---DRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 672
            M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+ +   DR W+ +  +P A VVNVGD+ +I+TNG++ S+ HRA VN   +R S+  F       +V P    ++  TP+ +R +T             +G S L ++ I
Sbjct:  209 MHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDR-WVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAI 354          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  319 MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEV-YPASSLISENTPSLF 672
            M++N+YP CPQPE  +G   H+D   LT +L  N V GLQ+  +  W+    +PN+ ++++GD +EI++NGKY+SI HR  VN    R S A F     +  V  P    +SE  P  F
Sbjct:  218 MKINFYPKCPQPELALGWEAHTDVSALTFILH-NMVPGLQLFYEDKWVTAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIVLQPLPETVSEVEPPRF 335          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16
Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  319 MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGE-VYPASSLISENTPSLF 672
            +++NYYP CPQPE  VG+  H+D   L+ +L  N V GLQ+     W+     P   +V+VGD +EI++NG+Y S+ HR  VN    R S   F     D   ++P   L++E  P+ F
Sbjct:  234 LKINYYPRCPQPELAVGVEAHTDVSALSFILH-NGVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARF 351          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = -1
Query:  364 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEV 774
            E+  +A  +   +GK +N+  +   N FE     +R+N Y P     +V GL PH+D   LTIL Q +++ GL+++ +  WI + P   A  VN+GD+ + ++NG Y+S+ HR    +  ER SIA F     + E+
Sbjct:  162 EIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQ-DQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEI 297          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = -1
Query:  307 ENGMQVMRMNYYPPCPQ-------PEKV-------VGLTPHSDGCGLTILLQINEVEGLQIKKDR-MWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLT 690
            E+   ++R+N+YPP  +       P K+       +G   HSD   LTIL + N V GLQI     +WIP+ P P+ F V VGD ++++TNG++ S+ HR   N+   R S+  F     +  + P S +++ ++P L+R  T
Sbjct:  169 EHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTIL-RSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFT 310          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.780e-14
Identity = 43/136 (31.62%), Postives = 68/136 (50.00%), Query Frame = -1
Query:  307 ENGMQVMRMNYYPPCPQPEK-------VVGLTPHSDGCGLTILLQINEVEGLQIK-KDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLT 690
            +N   ++R+N+YPPCP   K       V+G   H+D   +++L + N   GLQI   D  WI + P   +F  NVGD ++++TNG+++S+ HR   N    R S+  F        + P + LI      L+   T
Sbjct:  164 QNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVL-RSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFT 298          
The following BLAST results are available for this feature:
BLAST of CX676549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G3OX3_ARATH1.904e-1740.00Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G3O23_WHEAT5.541e-1730.69Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
GSL_ARATH7.236e-1737.75Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G3O22_WHEAT7.236e-1730.69Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT9.451e-1734.90Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
LDOX_PERFR1.234e-1639.50Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_MAIZE3.591e-1637.82Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G2OX7_ARATH3.591e-1633.58Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX2_PEA1.155e-1433.57Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G2OX1_ARATH9.780e-1431.62Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70F04-K8-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676549 ID=CX676549; Name=CX676549; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTCAATGAAGTGGTTAAATTGCCAAAAAGCATTTGAA
TAACATTGTCAAGTACATGTGTATCACTTGCAATCTCATGATAAGCACAC
AAGAATTCAATTTCAAGAAAGACAGATACTGATCCGGTATAAGCACATAT
CATCATGAGCATGTTGTATTCTCAGTTTCTGTGCCACACTCCTTAATCCA
AAATAAACTTATAATACTAGCCTCGACCGTGTTGAATTCTCAAGACATCC
AGATAAGATTTTCCACTAAGCTCACGAGCGAGCCGGCGCCGGAGGTACTC
TTCAACTGTCAATCTTCTAAACAATGAAGGTGTATTTTCAGAGATCAAAC
TGGATGCTGGGTATACTTCACCATCGTATCTCGCGTAGTAAAATGCGGCA
ATGGAGTGTCTTTCATGTACAGAGTTTACAGTTGCACGATGCTCAATACT
ACGGTATTTTCCATTGGTTATAATCTCCATAATGTCTCCAACGTTGACGA
CGAAGGCATTTGGGAGGGGAGTAAGAGGAATCCACATTCTATCTTTCTTT
ATCTGCAGACCTTCTACTTCATTGATCTGTAGCAGAATGGTAAGACCACA
GCCATCAGAATGAGGCGTAAGACCCACAACCTTCTCCGGCTGAGGGCATG
GAGGGTAATAGTTCATCCTCATTACTTGCATTCCATTTTCAAAGAAGTTT
CTCATTTCTTGATCTTTGATATTTAAAACTTTTCCCATTTTCAATATCAG
ATTCATGGCTAGAGATTTTAACTCCATTGA
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