FC921882

Overview
NameFC921882
Unique NameFC921882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    4 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSD------GPPIDWNTRVKIALCAAQGLTFLHEE 357
            I EG    ++   F  +A   KK +A+      S +   +F + ++ ++ L+H +  +LLG+     ++ R+LIY+    GSL  +++GR        GP ++WN RVKIA  AA+GL FLHE+
Sbjct:   79 IGEGSYGRVFCGKFKGEAVAIKKLDAS-----SSEEPDSDFTSQLSVVSRLKHDHFVELLGYCLE--ANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEK 195          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  103 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 357
            S+QG +EF N+V+ +A LQH NL KLLG+   DG ++++L+YE + + SLD  ++       +DW  R KI    A+G+ +LH +
Sbjct:  381 STQGAEEFKNEVDVVAKLQHRNLAKLLGY-CLDG-EEKILVYEFVPNKSLDYFLFDNEKRRVLDWQRRYKIIEGIARGILYLHRD 463          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    4 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTFLH 351
            I  G    +Y+A   D +  + K    VT      QG +EF+ ++ T+  ++H NL  LLG+  + G ++R+L+YE + +GSL+ +++ ++   G  +DW+ R KIA+ AA+GL FLH
Sbjct:  864 IGSGGFGDVYKAKLADGSVVAIKKLIQVT-----GQGDREFMAEMETIGKIKHRNLVPLLGY-CKIG-EERLLVYEYMKYGSLETVLHEKTKKGGIFLDWSARKKIAIGAARGLAFLH 974          
The following BLAST results are available for this feature:
BLAST of FC921882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
Y2197_ARATH9.639e-1133.06Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
CRK25_ARATH9.639e-1140.00Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
BRL3_ARATH9.639e-1134.75Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC06053E04T7 RindPdigS Citrus sinensis cDNA clone C06053E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921882 ID=FC921882; Name=FC921882; organism=Citrus sinensis; type=EST; length=374bp
TGCATTTCAGAAGGTCTATCCTCTGTAATGTATAGGGCTTCGTTTGGAGA
TGATGCTTCAACTTCAAAAAAGTTTGAAGCCACTGTTACTCGCCTTAATC
CATCCAGCCAGGGTGTGAAGGAATTTATAAATGATGTAAACACCCTTGCA
TCATTGCAACATCCAAATCTCTGTAAATTGCTTGGTTTTCATGCACGTGA
TGGATCGGACCAGAGAGTGTTGATCTATGAGAGACTTTTTCATGGAAGCT
TGGACCGTCTTATTTATGGGAGATCAGATGGGCCTCCAATTGATTGGAAC
ACCAGGGTAAAAATTGCATTATGTGCTGCACAAGGTCTTACCTTCTTGCA
TGAAGAAGGGCCTTTTCAGGCAAT
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