CX676440

Overview
NameCX676440
Unique NameCX676440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676440 vs. ExPASy Swiss-Prot
Match: P2C73_ORYSJ (Probable protein phosphatase 2C 73 OS=Oryza sativa subsp. japonica GN=Os11g0109000 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 68/188 (36.17%), Postives = 91/188 (48.40%), Query Frame = -3
Query:  119 GVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSINSEDTSFVSADEEPRASADLEETEKFPEFFQTLKESFLKAFKVMDRELRMHATIDCFCSGTTAVTLIKQVLNFSFPEYFFLLNFTVLCYPYDRKITIASIFV*GQHLVIGNVGDSRAVLGTRDKDDSLVAMQLTVDLK 682
            GVFDGHGP G  VA+ VRD LP+KLSS   +    +            S N++  +   +D        L +T    +   T K  F+K F+ +D +LR H+ IDC CSGTTAVT+++Q                                  G HL+I N+GDSRAVL TRD  D  +++QLT DLK
Sbjct:   66 GVFDGHGPLGREVARHVRDVLPVKLSSSLALKTEQDP-----------SSNTDKETLEKSD-----CTSLSDTSNEKQLLSTWKNIFVKTFEDVDEDLRQHSGIDCICSGTTAVTVVRQ----------------------------------GDHLIIANLGDSRAVLCTRDSKDRPISVQLTTDLK 203          
BLAST of CX676440 vs. ExPASy Swiss-Prot
Match: P2C73_ARATH (Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 63/188 (33.51%), Postives = 91/188 (48.40%), Query Frame = -3
Query:  119 GVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSINSEDTSFVSADEEPRASADLEETEKFPEFFQTLKESFLKAFKVMDRELRMHATIDCFCSGTTAVTLIKQVLNFSFPEYFFLLNFTVLCYPYDRKITIASIFV*GQHLVIGNVGDSRAVLGTRDKDDSLVAMQLTVDLK 682
            G+FDGHGP+GH VAK+VR+S+PL L  +W      +++L + ++                  EP    DLE + K    F   K+S+LK    +D+EL  H  ID + SGTTA+T+++Q                                  G+ + + NVGDSRAVL     + SLVA+QLT+D K
Sbjct:   94 GIFDGHGPWGHYVAKQVRNSMPLSLLCNW------QKILAQATL------------------EP--ELDLEGSNKKISRFDIWKQSYLKTCATVDQELEHHRKIDSYYSGTTALTIVRQ----------------------------------GEVIYVANVGDSRAVLAMESDEGSLVAVQLTLDFK 221          
BLAST of CX676440 vs. ExPASy Swiss-Prot
Match: P2C64_ORYSJ (Probable protein phosphatase 2C 64 OS=Oryza sativa subsp. japonica GN=Os07g0566200 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 65/189 (34.39%), Postives = 90/189 (47.62%), Query Frame = -3
Query:  119 GVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSINSEDTSFVSADEEPRASADLEETEKFPEFFQTLKESFLKAFKVMDRELRMHATIDCFCSGTTAVTLIKQVLNFSFPEYFFLLNFTVLCYPYDRKITIASIFV*GQHLVIGNVGDSRAVLGTRD-KDDSLVAMQLTVDLK 682
            GVFDGHGP+GH+VA+RVRDSLPL+L S                            +  S  + P A+                +++F +A+K MD++LR H ++DCFCSG+TAVT++K                                   G  L + N+GDSRAVLG+R+     +VA+QLTVDLK
Sbjct:   86 GVFDGHGPHGHVVARRVRDSLPLRLMS---------------------------AARDSGADMPAAA---------------WRKAFARAYKAMDKDLRSHPSLDCFCSGSTAVTVLKL----------------------------------GSDLYMANIGDSRAVLGSREATGGGMVAVQLTVDLK 198          
BLAST of CX676440 vs. ExPASy Swiss-Prot
Match: P2C12_ORYSJ (Probable protein phosphatase 2C 12 OS=Oryza sativa subsp. japonica GN=Os02g0224100 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 60/191 (31.41%), Postives = 87/191 (45.55%), Query Frame = -3
Query:  119 GVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLRE---ISINTAGSINSEDTSFVSADEEPRASADLEETEKFPEFFQTLKESFLKAFKVMDRELRMHATIDCFCSGTTAVTLIKQVLNFSFPEYFFLLNFTVLCYPYDRKITIASIFV*GQHLVIGNVGDSRAVLGTRDKDDSLVAMQLTVDLK 682
            GVFDGHG  G  ++K VRD LP  + SH    + ++    +    + +   + +S   S  ++  +P ASA  +  E++       +++   AF  MD EL++   +DC  SGTTAV  IKQ                                  G+ L+I N+GDSRAVL T      L A+QLTVD K
Sbjct:   74 GVFDGHGRCGQFISKLVRDYLPFMILSHRNALLLADAAADDDDDAAFSDDAAASSSADSSGNSSPQPSASASAQMLEEW-------RQACASAFAAMDGELKLQPNLDCAFSGTTAVCAIKQ----------------------------------GRDLIIANLGDSRAVLATMSDTGYLQAVQLTVDHK 223          
The following BLAST results are available for this feature:
BLAST of CX676440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
P2C73_ORYSJ1.857e-2336.17Probable protein phosphatase 2C 73 OS=Oryza sativa... [more]
P2C73_ARATH2.125e-1933.51Probable protein phosphatase 2C 73 OS=Arabidopsis ... [more]
P2C64_ORYSJ2.776e-1934.39Probable protein phosphatase 2C 64 OS=Oryza sativa... [more]
P2C12_ORYSJ1.425e-1531.41Probable protein phosphatase 2C 12 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F12-K23-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676440 ID=CX676440; Name=CX676440; organism=Citrus sinensis; type=EST; length=687bp
TTTTTTGGTCTTTTGACTGTTGTCGCTATAATGTTTAATAAAAGAGAAGC
TGTTCAAAAGAACGGAGAGGCACAAAAGGAGAGGGGGGAAGAGAGAGAAA
AAAACCTGGAAGATTTGGTTTGAGATCCACAGTCAACTGCATGGCAACGA
GAGAATCATCTTTGTCTCTTGTGCCCAACACAGCTCTGGAATCCCCAACA
TTTCCAATGACAAGATGTTGACCCTACACAAATATGGAGGCAATTGTTAT
CTTGCGATCATAAGGATAACACAAAACTGTAAAATTTAATAAAAAAAAAT
ATTCAGGAAAGCTAAAATTCAATACCTGCTTGATCAGAGTTACTGCTGTT
GTCCCACTGCAGAAACAATCAATAGTTGCATGCATTCTTAGTTCCCTATC
CATGACTTTGAAAGCCTTCAGAAATGACTCCTTTAGAGTCTGAAAGAACT
CTGGAAACTTTTCTGTTTCCTCAAGATCGGCAGAGGCTCTAGGTTCTTCA
TCGGCAGATACAAAAGATGTATCCTCAGAGTTTATGCTTCCAGCAGTGTT
AATGCTTATCTCTCTCAAAACTTCCTCACTGGTTATGTTCACTTCCCAGT
GAGAGCTCAGTTTTAATGGAAGAGAATCCCTCACTCTCTTCGCAACCATA
TGACCATAGGGACCATGGCCATCAAAAACACCACCCT
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