FC921881

Overview
NameFC921881
Unique NameFC921881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921881 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 3
Query:    6 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNG 212
            +++YPP P  D   GL  HTD  G+ L+  ++ + GLQ+ KD  WI+V  +  +I+VN+GDQI +++NG
Sbjct:  157 INHYPPYPHSDSFNGLEPHTDINGLTLIITNE-IPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNG 224          
BLAST of FC921881 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   15 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITN 209
            +PPCP+PDL  G   H+D G  + +   D + GLQ+ ++G W DVP +  ++++N+GD +++ITN
Sbjct:  226 FPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITN 289          
BLAST of FC921881 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/71 (42.25%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNG 212
            ++++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+ VPP   S+VVN+GD   +++NG
Sbjct:  213 QLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNN-TAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNG 282          
BLAST of FC921881 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 3
Query:    3 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNG 212
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SI++++GD IE+++NG
Sbjct:  219 KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNG 287          
BLAST of FC921881 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.715e-11
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 3
Query:    3 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNG 212
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SIV+++GD +E+++NG
Sbjct:  217 KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNG 285          
The following BLAST results are available for this feature:
BLAST of FC921881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
FLS_MATIN3.339e-1142.03Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
ACCH2_ARATH4.361e-1140.001-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX1_ARATH5.695e-1142.25Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
LDOX_VITVI7.438e-1138.57Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_MALDO9.715e-1138.57Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]

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Properties
Property NameValue
Genbank descriptionC06053E02T7 RindPdigS Citrus sinensis cDNA clone C06053E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921881 ID=FC921881; Name=FC921881; organism=Citrus sinensis; type=EST; length=214bp
CCAAAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGT
CTCCGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGA
CAAAGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGC
CCCCATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTG
ATCACCAATGGAAT
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