CX676433

Overview
NameCX676433
Unique NameCX676433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.429e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            IIEPSL ALA K+N DKMICRKCYARL PRA NCRK+KCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.438e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRKKKCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.184e-19
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+Q+RPKK +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.747e-17
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            IIEPSL  LA KYN +K ICRKCYARL PRA NCRKKKCGH++QLRPKKK K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.747e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            IIEPSL  LA+KYN DK ICRKCYARL PRA NCRKKKCGHS++LR KKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CX676433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RL40_NEUCR1.429e-1982.6960S ribosomal protein L40 OS=Neurospora crassa GN=... [more]
RL40_SCHPO2.438e-1982.6960S ribosomal protein L40 OS=Schizosaccharomyces p... [more]
RL40_YEAST3.184e-1980.7760S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
RL40_CRYNE7.842e-1876.9260S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
RL40_EIMBO1.747e-1778.8560S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]
RL40_CAEEL1.747e-1778.8560S ribosomal protein L40 OS=Caenorhabditis elegan... [more]
UBL1_ORYSJ3.643e-15100.00Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_WHEAT3.643e-15100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR3.643e-15100.00Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN3.643e-15100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676433 ID=CX676433; Name=CX676433; organism=Citrus sinensis; type=EST; length=500bp
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTAAAA
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