CX676432

Overview
NameCX676432
Unique NameCX676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  382 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 498
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
UBIQ_HORVU3.643e-15100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN3.643e-15100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_EUPEU3.643e-15100.00Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_DESAN3.643e-15100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA3.643e-15100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_CHLRE3.643e-15100.00Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_BRARA3.643e-15100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA3.643e-15100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA3.643e-15100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF3.643e-15100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676432 ID=CX676432; Name=CX676432; organism=Citrus sinensis; type=EST; length=499bp
TTTTTAGAAAATAGTAGATTCAGGCAAGTTATAATAAAGTGCTCAATGTC
ACGGCACATAGAGGCGATAGTAATCAGTCTACAAATACTCTCAACCCTGG
AAACATCTTGAAACAGAAATCACGTACTAAGTGACAACTATTACTAGGCA
ATAGTTGATGCTACATATTCTAGGCAAAACATCCTGTTTCAGTATAAAAT
GTAGCATTTCTCTGCAGAATATCTACTTGATCTTCTTCTTTGGCCTCAGC
TGGTTGCTGTGCCCACATTTCTTCTTCCTGCAGTTCACAGCACGGGGGTG
CAGGCGTGCATAACATTTTCGGCAGATCATCTTGTCCTGGTTATACTTCC
TTGCCAATGCCATCAAAGAAGGCTCAATAATACCACCACGAAGCCTCAGA
ACCAGATGCAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAGAGTACG
GCCATCCTCAAGTTGCTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGC
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