FC921879

Overview
NameFC921879
Unique NameFC921879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921879 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.084e-29
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  100 FPVISLENINGAEGAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQGFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            FPVI++E + G E  A +E++++ACE WGFFE++NHGI  E MD VE++TK HY++  EQ F E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M
Sbjct:    7 FPVINMELLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLM 119          
BLAST of FC921879 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.412e-27
Identity = 54/113 (47.79%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   97 NFPVISLENINGAEGAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQGFKELVASRALEGIQ-TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            +FPVI++E + G++  A +  + +ACE WGFFEL+NHGI  E M+ VE + K HYR+  EQ FKE  AS+ L+ ++  + +++DWESTF++RHLP S I+++PDLD++ R  M
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEF-ASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATM 116          
BLAST of FC921879 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 53/113 (46.90%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   97 NFPVISLENINGAEGAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQGFKELVASRALEGIQT-EVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            +FPVI++E + G++  A +  + +ACE WG +EL+NHGI  E M+ VE + K HYR+  EQ FKE  AS+ L+ ++  E  ++DWESTF++RHLP S I+++PDLD++ R  M
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEF-ASKTLDTVENVEPENLDWESTFFLRHLPTSNISQIPDLDDDCRSTM 116          
BLAST of FC921879 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.145e-20
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  115 LENINGAEGAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYR----KCMEQGFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            +E + G+  +  +  + +ACE WGFFEL+NHGI  E  +  E + K HYR    +  EQ FKE  A     G   + +++DWESTF++RHLP S I++VPDLDE+    M
Sbjct:    1 MELLEGSRRSDAMAVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGDNLDWESTFFLRHLPTSNISQVPDLDEDCGSTM 110          
BLAST of FC921879 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  103 PVISLENINGAEGAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQGFK-----ELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDE---EYRK 426
            PVI    ++G E A  + +I   CE+WGFF+LVNHGI  E ++ V++++   Y K  E+ F+     +L+ +   EG    ++++DWE  F ++   +   N  PD +E   EYR+
Sbjct:    4 PVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECY-KLREERFEGSKPVQLLDTLVKEGDGQRLDNVDWEDVFVLQDDNEWPSNP-PDFEETMKEYRE 117          
The following BLAST results are available for this feature:
BLAST of FC921879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO1_ORYSI2.084e-2949.561-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_DORSP7.412e-2747.791-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP6.275e-2646.901-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_DENCR5.145e-2042.731-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_MUSAC7.446e-1133.621-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

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Properties
Property NameValue
Genbank descriptionC06053D12T7 RindPdigS Citrus sinensis cDNA clone C06053D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921879 ID=FC921879; Name=FC921879; organism=Citrus sinensis; type=EST; length=512bp
CGCGGGGGCACTAATTAACAAGCTCACAAACACATACACATACACAAACA
CTCACAAACACACAGCTTGTTAAAGAAAGAATTCAGAGATATGGAGAACT
TCCCCGTTATCAGCTTGGAGAACATCAATGGTGCTGAAGGAGCGGCTATC
TTGGAGAAGATCAACGAGGCCTGTGAGAAATGGGGCTTCTTTGAGCTGGT
GAATCATGGAATTGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCA
AGGCGCATTACAGAAAATGCATGGAGCAAGGATTCAAGGAGCTTGTTGCA
AGCAGGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGA
AAGCACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCC
CAGATCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAA
TTGGAGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGG
AATAGAGAAGGG
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