CX676398

Overview
NameCX676398
Unique NameCX676398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.719e-60
Identity = 116/169 (68.64%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD             ETAGGVMT LI RN+TIPTK+ Q+F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  308 DLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.719e-60
Identity = 116/169 (68.64%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD             ETAGGVMT LI RN+TIPTK+ Q+F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  308 DLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.933e-60
Identity = 117/169 (69.23%), Postives = 128/169 (75.74%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAK+DK+ +HDVVLVGGSTRIPKVQ+LLQDFFNGKEL KSINPDE           +L G+  EKVQD             ETAGGVMT LI RN TIPTK+ Q F+TYSDNQPGV IQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  310 DLFRSTLEPVEKALRDAKLDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLIQRNATIPTKQTQTFTTYSDNQPGVFIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 478
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 2.933e-60
Identity = 115/169 (68.05%), Postives = 133/169 (78.70%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRK MEPVE+ LRD+K+DK+SV+++VLVGGSTRIP+VQ+L+ DFFNGKE CKSINPDE           +L+G+ +EK QD             ETAGGVMT LI RNTTIPTKK ++FSTYSDNQPGVLIQV+EGER RT+D NLLGKFELSGIPPAPRGVPQI V
Sbjct:  306 DLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEV 474
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.933e-60
Identity = 116/169 (68.64%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  ++PVEK L+DAK+DKS V+++VLVGGSTRIPKVQ+L+ DFFNGKE  KSINPDE           IL+G+ + K QD             ETAGGVMT LIPRNTTIPTKK ++FSTYSDNQPGVLIQVYEGER RT+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  306 DLFRSTLDPVEKVLKDAKLDKSQVNEIVLVGGSTRIPKVQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILTGDTSSKTQDLLLLDVAPLSLGIETAGGVMTKLIPRNTTIPTKKSEIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQIEV 474
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 2.933e-60
Identity = 117/169 (69.23%), Postives = 130/169 (76.92%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAKMDK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD             ETAGGVMT LI RN+TIPTK+ Q F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  308 DLFRGTLEPVEKALRDAKMDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.933e-60
Identity = 117/169 (69.23%), Postives = 130/169 (76.92%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAKMDK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD             ETAGGVMT LI RN+TIPTK+ Q F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  308 DLFRGTLEPVEKALRDAKMDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.830e-60
Identity = 115/169 (68.05%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD             ETAGGVMT LI RN+TIPTK+ Q+F+TYSDNQPGVLIQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  308 DLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 476
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 230.335 bits (586), Expect = 3.830e-60
Identity = 115/169 (68.05%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD             ETAGGVMT LI RN+TIPTK+ Q+F+TYSDNQPGVLIQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  308 DLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 476
[Close]
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP70_ONCVO (Heat shock 70 kDa protein (Fragment) OS=Onchocerca volvulus PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 3.830e-60
Identity = 119/169 (70.41%), Postives = 128/169 (75.74%), Query Frame = 1 
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFR  M+PVEK LR AKMDK+ VHD+VLVGGSTRIPKVQ+LL DFF+GKEL KSINPDE           ILSG+ +E VQD             ETAGGVMT LI RNTTIPTK  Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:   65 DLFRSTMDPVEKALRVAKMDKAQVHDIVLVGGSTRIPKVQKLLSDFFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTSQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEV 233
The following BLAST results are available for this feature:
BLAST of CX676398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71A_PIG1.719e-6068.64Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71A_BOVIN1.719e-6068.64Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HSP76_HUMAN2.933e-6069.23Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP72_SCHPO2.933e-6068.05Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP72_PICAN2.933e-6068.64Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HS71B_MOUSE2.933e-6069.23Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE2.933e-6069.23Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP71_PONAB3.830e-6068.05Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN3.830e-6068.05Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HSP70_ONCVO3.830e-6070.41Heat shock 70 kDa protein (Fragment) OS=Onchocerca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69D01-G1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676398 ID=CX676398; Name=CX676398; organism=Citrus sinensis; type=EST; length=508bp
GATCTGTTCAGAAAATGCATGGAGCCAGTTGAGAAGTGTTTGAGGGATGC
CAAGATGGACAAGAGCTCAGTCCATGATGTTGTTCTTGTCGGAGGATCTA
CTAGGATTCCCAAAGTCCAGCAGCTTTTGCAAGATTTCTTTAATGGGAAG
GAGCTTTGCAAGAGCATCAACCCCGATGAGGCTGTTGCCTATGGTGCTGC
TGTGCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTGCAGGATC
TTCTGCTATTGGATGTCACACCTCTCTCCCTTGGTTTGGAGACTGCTGGT
GGTGTCATGACTGTGTTGATTCCAAGGAACACAACCATTCCCACCAAGAA
GGAGCAGGTCTTCTCAACTTACTCTGACAACCAACCTGGTGTGTTGATCC
AAGTCTATGAAGGCGAAAGGACAAGAACCAGGGACAATAACTTGTTGGGT
AAATTTGAGCTCTCTGGTATTCCCCCAGCTCCTAGGGGTGTTCCTCAAAT
CACTGTGT
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