FC921876

Overview
NameFC921876
Unique NameFC921876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I LL  GAREA+FRNIK+IAECLA+ELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  158 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.684e-26
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVD+SPLRRVNQ+I L+T GAREA+FRNIK+IAECLA+ELINAAK SSNSYAIKKKDE+ERVAK+NR
Sbjct:  137 VRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26
Identity = 60/71 (84.51%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I L+  GAREA+FRNIK++AECLA+ELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  160 VRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.752e-26
Identity = 60/71 (84.51%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDV+PLRRVNQ+I LL  GAREA+FRN+K+IAECLA+ELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  140 VRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.901e-26
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I LL  GAREA+FRNIK+IAECLA+ELINA K SSNSYAIKKKDELERVAKSNR
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.359e-26
Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVD+SPLRRV+Q+I LLT GARE++FRNIK+IAECLA+ELINAAK SSNSYAIKKKDE+ERVAK+NR
Sbjct:   84 VRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.634e-21
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSP+RRVN ++ LLT G R A+FRNI+++AECLA+ELINA+K S NSY+IK+KD LER AKS+R
Sbjct:  120 VRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.761e-18
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 3
Query:   12 QAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            QAVDVSPLRR+N ++ LL +G R  +FRN KS+AECLA+E++NA+KS + S+AI KK++LERVA SNR
Sbjct:   81 QAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.132e-14
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:    9 RQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            R +VDVSPL+R++ +IS L+ G R ASFRN  ++AE +A ELI A+ +S NSYA+ KK E+ER+A+SNR
Sbjct:  140 RTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.303e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 3
Query:    9 RQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            R +VDV+P RRV+Q++  +  GAR+ +F N K I ECLAEELI AA+    SYAI++K+E+ER+A S+R
Sbjct:  137 RVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
The following BLAST results are available for this feature:
BLAST of FC921876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS5A_DROME1.290e-2687.3240S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS52_ARATH1.684e-2683.1040S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5B_DROME2.873e-2684.5140S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL3.752e-2684.5140S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_RAT4.901e-2685.9240S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NICPL8.359e-2681.6940S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_DICDI3.634e-2169.0140S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.761e-1863.2440S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS5_ENCCU1.132e-1456.5240S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE4.303e-1453.6230S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC06053D09T7 RindPdigS Citrus sinensis cDNA clone C06053D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921876 ID=FC921876; Name=FC921876; organism=Citrus sinensis; type=EST; length=323bp
CCGTCCTTCGTCAAGCCGTCGATGTGTCTCCCCTCCGTCGCGTGAACCAG
TCCATCTCTCTGCTCACCATCGGTGCCCGCGAGGCTTCTTTCCGCAACAT
CAAGAGCATTGCTGAGTGCCTTGCTGAGGAGCTGATCAACGCCGCCAAGA
GTTCCTCTAACTCCTACGCTATCAAGAAGAAGGATGAGCTCGAGCGTGTT
GCCAAGAGCAACCGGTAAAGGGGTAGTGTTGGATTTGTTCTCCGTATGGT
CCTCTGTTTGCGTATACTGGAGTGGACGGGGGTTTAACCGGGATTCAGTG
GATTCGCATGCATCTGCAAGGCT
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