FC921876

Overview
NameFC921876
Unique NameFC921876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 35/68 (51.47%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   12 QAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            ++VDVSP RRV++++  +  GA  ASF++ KSI  CLA+E++ AAK+ ++S+AI KK+E+ERVA+S R
Sbjct:  117 KSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQSAR 184          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            AVDV+P RRV+ ++  L +GA+EASF N K I E LAEE+I AA +   S+AI+KK+E+ER+A S+R
Sbjct:  128 AVDVAPQRRVDLALRHLVMGAKEASFNNPKPIEEALAEEIIAAASNDPKSFAIRKKEEIERIALSSR 194          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.214e-13
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            AVDVSP RR++ ++  +  GA++ASF N K I E LAEE+I AA + S S+AIK+K+E+ER+A S+R
Sbjct:  127 AVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR 193          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.214e-13
Identity = 35/65 (53.85%), Postives = 51/65 (78.46%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKS 209
            AVD+SP RRV+ S+  +T GA +A+F+N KSI ECLA E++ AA+  + S+AI+KK+E ER+A+S
Sbjct:  120 AVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLANEIMLAAEYDTRSFAIQKKEEKERIARS 184          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            +VDVSP RR++ ++  +T GAR  SF N K I ECLA+EL+ AA +   SYA++K++ELER+A ++R
Sbjct:  158 SVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR 224          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            +VDVSP RR++ ++  +T GAR  SF N K I ECLA+E+I AA +   SYA++K++ELER+A ++R
Sbjct:  158 SVDVSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIAAASR 224          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   12 QAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            ++VDVSP RRV++++  +  GA  ASF++ KSI  CLA+E++ AA++   S+AI KK+E+ERVA+S R
Sbjct:  117 KSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQSAR 184          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            +VDVSP RR++ ++  +T GAR  SF N K I ECLA+E+I AA +   SYA++K++ELER+A ++R
Sbjct:  157 SVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIAAASR 223          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            AVDV+P RRV+ ++  L  GA EASF N K I E LAEE+I AA + + S AI+KK+E+ER+A S+R
Sbjct:  129 AVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANNDNKSVAIRKKEEIERIALSSR 195          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 32/65 (49.23%), Postives = 51/65 (78.46%), Query Frame = 3
Query:   15 AVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKS 209
            AVD++P RRV+ S+  +T GA +++F+N KS A+CLA+E++ A+   S S+A++KK+E ERVA+S
Sbjct:  121 AVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQCLADEILLASDEDSRSFAVQKKEEKERVARS 185          
The following BLAST results are available for this feature:
BLAST of FC921876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS7_THEVO4.758e-1351.4730S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_SULTO4.758e-1355.2230S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_SULSO6.214e-1353.7330S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_METTH6.214e-1353.8530S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_THENV1.384e-1250.7530S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_PYRIL1.384e-1250.7530S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_THEAC1.808e-1250.0030S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_PYRAE1.808e-1250.7530S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_SULAC3.084e-1255.2230S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]
RS7_METST3.084e-1249.2330S ribosomal protein S7P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionC06053D09T7 RindPdigS Citrus sinensis cDNA clone C06053D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921876 ID=FC921876; Name=FC921876; organism=Citrus sinensis; type=EST; length=323bp
CCGTCCTTCGTCAAGCCGTCGATGTGTCTCCCCTCCGTCGCGTGAACCAG
TCCATCTCTCTGCTCACCATCGGTGCCCGCGAGGCTTCTTTCCGCAACAT
CAAGAGCATTGCTGAGTGCCTTGCTGAGGAGCTGATCAACGCCGCCAAGA
GTTCCTCTAACTCCTACGCTATCAAGAAGAAGGATGAGCTCGAGCGTGTT
GCCAAGAGCAACCGGTAAAGGGGTAGTGTTGGATTTGTTCTCCGTATGGT
CCTCTGTTTGCGTATACTGGAGTGGACGGGGGTTTAACCGGGATTCAGTG
GATTCGCATGCATCTGCAAGGCT
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