EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.673e-19
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGT-VKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 259
            LAK+HEVLIT+EEGS+GGFGS V+Q LA +GLLDGT +K+R +VLPD ++DH  P    AQAGL    I A V   LG+  EA
Sbjct:  554 LAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.002e-18
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 262
            LA+ HEVLITVEEGS+GGFGSHV+  LA  G LD  +K RPL LPD +++H +PA Q  + GL  S I ATV   LG+ R  +
Sbjct:  560 LAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HE+L+T+EEGSIGGFGSHV+Q LA  G+LDG V+ R LVLPD ++DH +P    A+AGL    I   VF  LG+
Sbjct:  554 LARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HEVLIT+EEG++GGF SHV+QFLA +GL+DG +K RP+V+PD +++   P    A+AGL  + I +TVF  LGQ
Sbjct:  558 LARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDGGLKVRPMVMPDIWMEQAKPEAMYARAGLDRAGIVSTVFKALGQ 635          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.973e-18
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 259
            LA  HE+LIT+EEGSIGGFG+HV+Q LA  G LDG VK R +VLPD ++DH +P    A AGL    I   VF  LG+  +A
Sbjct:  551 LANEHEILITIEEGSIGGFGTHVMQTLAEHGKLDGEVKMRAMVLPDVFLDHDTPTAMYANAGLDAKAIVKKVFEALGKEHKA 632          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.973e-18
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 259
            LA  HE+LIT+EEGSIGGFGSHV+Q L+  G LDG VK R +VLPD ++DH +PA   A AGL    I   VF  LG+   A
Sbjct:  551 LANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS_BEII97.673e-1959.041-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_MAGSA1.002e-1855.421-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_RHOPB1.309e-1856.411-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIME1.709e-1855.131-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRUSU3.808e-1860.531-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI3.808e-1860.531-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUO23.808e-1860.531-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC23.808e-1860.531-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_RHOPS4.973e-1854.881-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOP24.973e-1856.101-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
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