EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HEVLITVEEGSIGGFGS+V+ FLA  GLLD  +K RP+VLPD + D  +PA Q  +AGL   HI  T    LG
Sbjct:  554 LAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 262
            LA+ HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I   VF  LG  REA+
Sbjct:  552 LAREHEVLVMVEEGAVGGFASHVLQFLATDGLLDRGLKVRALTLPDTYQDHGKPDAMYAEAGLDRTGIVHAVFAALG--REAV 632          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD   K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD   K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HE+LIT+EEGS+GGFGSHV QFL   G LD G VK+R +VLPD + DH +PA   A+AGL    I A VF  LG+
Sbjct:  573 LARDHEILITIEEGSVGGFGSHVAQFLTDQGALDSGMVKFRTMVLPDVFQDHDTPAAMYARAGLDAKGIVAKVFEALGK 651          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.108e-17
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG-QTREALEI 268
            LA+ HEV IT+EEG+IGGFG+HV+QFLA + LL+  +K R L LPD Y++HGSP   L++ GL    I   VF  LG +TR+ L+I
Sbjct:  553 LAREHEVFITIEEGAIGGFGAHVLQFLAQEALLEHGLKVRTLRLPDEYLNHGSPEKILSRVGLDAKGIINAVFTSLGYETRKTLQI 638          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.447e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L+LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain S19) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.447e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L+LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.224e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA  HE LIT+EEG++GGFGSHV Q LA +G+ D  +K+R +VLPD +ID  SPAD  A AG+    I A V ++LG
Sbjct:  557 LAHDHEALITIEEGAVGGFGSHVAQLLADEGVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRUA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain 2308) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.210e-17
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            L + HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L+LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  552 LVREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS_RHOCS6.495e-1859.741-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_OCHA46.495e-1857.831-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_BRUME6.495e-1860.531-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB6.495e-1860.531-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRAJA6.495e-1858.231-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BARBK1.108e-1753.491-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BRUAB1.447e-1759.211-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUA11.447e-1759.211-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_SILPO3.224e-1754.551-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_BRUA24.210e-1757.891-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
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