EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.210e-17
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+  +K R L LPD Y++HGS    L++ GL    I  TVF+ LG+
Sbjct:  553 LAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGSQEKVLSRIGLDAVGIVNTVFSALGR 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.499e-17
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA  HEVL+T+EEGS+GGFG+HV+ F+A  GLLD   K R L LPD++++   P    A AGL  + I +TVFN LGQ
Sbjct:  553 LAAHHEVLVTIEEGSVGGFGAHVLHFMASAGLLDHGPKVRTLTLPDQWVEQAKPETMYANAGLDRAGIVSTVFNALGQ 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HE++ITVEEGSIGGFGSHV+ FLA +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  553 LARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HEV IT+EEG+IGGF S VVQ LA  GLLD  VK+RP+ LPDRYIDH +   Q   AGLT  HI  T  + LG
Sbjct:  577 LARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.379e-17
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+  +K R L  PD Y++HGSP   L+  GL    I  TV  ++G+
Sbjct:  553 LAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSTIGLDAMGIVNTVLTVVGR 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 202
            LA++H  L+ VEEGS+GGFGS V+QFL+ +GL+DG +K R L LPD YIDH +PA QLA+AGL
Sbjct:  552 LARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPAAQLAEAGL 614          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.600e-16
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ H+VLIT+EEGSIGGFGSHV+Q L  +G LD G V+ R ++LPD ++DH +P    A+AGL    I A VF  LG+
Sbjct:  578 LAREHDVLITIEEGSIGGFGSHVMQTLMDNGALDGGLVRVRSMILPDEFLDHDTPTAMYARAGLDAKGIVAKVFEALGK 656          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.600e-16
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 250
            LA  HEVLIT+EEGS+GGFGS V+QFLA +GLLD  +K R LV+PD +++   P    A AGL  + I  TVF  LG++
Sbjct:  553 LASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGRS 631          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 253
            LA+ HE LIT+EEG++GGFGSHV Q L+ + + D  +K+R +VLPD +ID  SP D    A +   HI A V ++LG  R
Sbjct:  557 LAEKHEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKDMYDSAAMNAEHIEAKVLDVLGVAR 636          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA  HEVL+ VEEG+IGGFG+H++QFLA +GLL+  +K R L  PD Y++HGSP   L++ GL    I  TVF  LG+
Sbjct:  553 LACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSRIGLDAVGIVNTVFTALGR 630          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS_BARHE4.210e-1753.851-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_AGRT55.499e-1753.851-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_RHIL37.181e-1755.131-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_GLUOX7.181e-1759.741-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS_BART19.379e-1751.281-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_AZOC51.225e-1663.491-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_NITWN1.600e-1654.431-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_AGRRK1.600e-1654.431-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_SILST2.089e-1648.751-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_BARQU2.089e-1653.851-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
back to top