EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            L  +HE LITVEEG+IGGFGSHV Q L+ +G+ D   K+R +VLPD +ID  SPAD  A AG+  + I   V ++LG
Sbjct:  557 LVANHEALITVEEGAIGGFGSHVAQLLSDEGVFDTGFKYRSMVLPDIFIDQSSPADMYAVAGMNAADIETKVLSVLG 633          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.564e-16
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ H+VLIT+EEGSIGGFGSHV+Q LA  G LD G V+ R +VLPD ++DH +P    A  GL    I A VF  LG+
Sbjct:  580 LARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.079e-16
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEI 268
            LA  H  L+TVEEGS+GGFGSHV+Q +  +GLLD G VK R +VLPD YID  + A QLA AGL    I A V  +LG+ +  + +
Sbjct:  554 LAAGHGALVTVEEGSVGGFGSHVLQLVTDEGLLDRGAVKVRAMVLPDIYIDQETQARQLAAAGLDADAIVAKVEGLLGKAKAGVSL 639          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.940e-16
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  553 LARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HE LITVEEG++GGFGSHV   LA + + D  +K+R +VLPD +ID  SP D  A AG+    I A V   LG
Sbjct:  555 LARHHEALITVEEGAVGGFGSHVAHLLAENAVFDTGIKYRSMVLPDIFIDQASPKDMYAVAGMNAEDIVAKVLTTLG 631          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.147e-15
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   17 AKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            A+ HE++ITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  554 ARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.147e-15
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  L
Sbjct:  553 LARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRAL 628          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.147e-15
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HEVL+T+EEGS GGFGS V++ LA  G LD  +K R + LPD + DH +PA    QAGLT  HIAA     LG+
Sbjct:  551 LAREHEVLVTIEEGSRGGFGSFVLEHLANCGGLDAGLKVRVMTLPDVFQDHDTPAAMYDQAGLTARHIAARAIEALGR 628          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.956e-14
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA  HEVLI VEEG+IGGFG+HV  +L   GLLDG +K R L +PDR+ +H +P  Q A+AG+    I   V + L
Sbjct:  555 LAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.336e-14
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            LA  HEVLI VEEG+IGGF SHV  +LA  GLLDG +K R L +PDR+ +H +P  Q A+AG+    I   V + L
Sbjct:  555 LAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS2_ROSDO2.729e-1653.251-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS_NITHX3.564e-1655.701-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_XANP26.079e-1652.331-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_RHIE67.940e-1652.561-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS1_JANSC1.354e-1551.951-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_RHILW5.147e-1550.651-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHIEC5.147e-1552.631-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_HYPNA5.147e-1553.851-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS1_RHORT1.956e-1451.321-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS2_RHORT3.336e-1452.631-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
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