EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 262
            LA+ H VLITVEEG++GGFGS V+  LA +GLLD  +K R LVLPD ++D   P     +AGL    I +TVF  L  +R+AL
Sbjct:  553 LARHHAVLITVEEGAVGGFGSQVLHMLANEGLLDHGLKVRSLVLPDLWMDQAKPDVMYEKAGLDAKGIVSTVFTAL--SRDAL 633          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.432e-14
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 265
            L K+HEV++T+EE SIGG G+HV+ + + +GL D  +K R + LPD +I+  +P  Q  +AGLT  HI  TV   L Q    +E
Sbjct:  553 LMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKALRQNSAGVE 636          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.432e-14
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA  HE LIT+EEG+IGGFGSHV Q LA  G+ D   ++R +VLPD +IDH S     A AGL  + I       LG
Sbjct:  553 LAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.706e-14
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 2
Query:   17 AKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 271
            A+ HE +ITVEEGSIGGFGSHV   L+  G+ D  +K+R ++LPD +I+  SP      AGL  S I+  + +IL  T+E+++++
Sbjct:  552 AREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSPKKMYDVAGLNASQISKKILDIL-FTKESIKVV 635          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.706e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 253
            L + H  L+TVE+G++GGFG+HV+ +LA  G  DG +  R + LPDR+I+  SP D  A AGL    IAAT    L + R
Sbjct:  556 LVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDGGLALRVMTLPDRFIEQASPEDMYADAGLRAEDIAATARGALARGR 635          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 265
            LA+ HEVLITVEEG++GGFG+ V+  LA  G LD  ++ R L LPD + D  +P D    AGL   HIAA     +G+   A E
Sbjct:  551 LAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFDMYETAGLNARHIAAKALEAMGKDDAAAE 634          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 265
            L  SHEV +T+EEG+IGG G+HV+   +  GL+DG +K R + LPD + +H  P  Q A+AGL    I ATV   L +  + LE
Sbjct:  553 LLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKPEKQYAEAGLDAESIVATVLAALHRNSKGLE 636          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 241
            L  +H+V++TVEEGSIGG G+HV+   + +GL+DG +K R + LPD + DH +P  Q  +AGL   HI  TV   L
Sbjct:  553 LMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.391e-12
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    8 SGLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            + L ++H+ LITVE+G++ GFG+ V+Q +A +GLLD   K R + LPDR+ID  +PA+    AGL    I   V  +LG+
Sbjct:  554 ANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGR 633          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 37/77 (48.05%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            L   H  LITVE+G++ GFG  V+  LA  G LDG    R L LPDR+ID  SPA+  A AGLT   IA      +G
Sbjct:  552 LMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAEMYADAGLTADDIAQAALEAMG 628          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS_AGRVS4.357e-1451.811-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_ERYLH7.432e-1444.051-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS2_RHOS47.432e-1450.651-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_PELUB9.706e-1444.711-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS1_RHOS49.706e-1446.251-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_MARMM1.268e-1347.621-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_SPHWW2.162e-1345.241-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_NOVAD2.162e-1347.371-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS1_ROSDO2.391e-1243.751-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS2_JANSC6.956e-1248.051-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
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