EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HE +ITVEEG++GGFG+ V+Q LA  G LD  +K R LVLPD + D   P    AQAGL    I     + LG
Sbjct:  551 LAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HE +ITVEEGS+GGFG+ V+Q LA  G LD  +K R L LPD + D   P    AQAGL    I     + +G
Sbjct:  551 LAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HE +ITVEEGS+GGFG+ V+Q LA  G LD  +K R L LPD + D   P    AQAGL    I     + +G
Sbjct:  551 LAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAAT 226
            L + H  LIT+E+G++GGFG+ V+ +LA  G L+     R + LPD YIDHGSP +  A AGLT + I  T
Sbjct:  554 LIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDT 624          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 37/77 (48.05%), Postives = 43/77 (55.84%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 244
            LA+ HE LITVEEG++GGFG  V+  LA  G LD  +K R L LPD + D   P    AQAGL    I       LG
Sbjct:  551 LAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKPEAMYAQAGLDAEGIVRAALAALG 627          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 271
            L KSH+V+IT+EEG++GGF + V+   + +GL+D  +K R L LPDR+        Q A+AGL    I A V + L +  + +E++
Sbjct:  553 LLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHRNSKPVEVV 638          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS_CAUSK1.186e-1149.351-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCR2.643e-1148.051-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN2.643e-1148.051-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_RHOCA4.509e-1147.891-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_PHEZH4.509e-1148.051-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS1_ZYMMO4.509e-1139.531-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
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