EG358205

Overview
NameEG358205
Unique NameEG358205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig160 contig Csv1_Contig160:1307..1755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG358205 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 37/118 (31.36%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:   10 PKVVKAASVICRLMDDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIAFIYKEDDGY-THSYLIKDQIASVLGDHVP 360
            P +V+ AS+I RL DD+     E KRG V  +I+CY    G S++EA +  +  ++ +WK++N E     +  +   +    NL RA  FIY+  DG+ + + L K+++  ++   +P
Sbjct:  504 PNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGDGHASQNNLSKERVLGLIITPIP 621
The following BLAST results are available for this feature:
BLAST of EG358205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPS1_CANSA5.314e-1131.36(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]

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Properties
Property NameValue
Genbank description6e1 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0006e1, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358205 ID=EG358205; Name=EG358205; organism=Citrus sinensis; type=EST; length=449bp
ACGCGGGTCCCTAAGGTTGTAAAAGCAGCATCAGTTATCTGCAGACTCAT
GGATGACATGCAAGGTCATGAGTTTGAGCAGAAGAGAGGACATGTTGCGT
CAGCTATTGAATGTTACACGAAGCAGCATGGTGTCTCTAAGGAAGAGGCA
ATTAAAATGTTTGAAGAAGAAGTTGCAAATGCATGGAAAGATATTAACGA
GGAGTTGATGATGAAGCCAACCGTCGTTGCCCGACCACTGCTCGGGACGA
TTCTTAATCTTGCTCGTGCAATTGCTTTTATTTACAAAGAGGACGACGGC
TATACGCATTCTTACCTAATTAAAGATCAAATTGCTTCTGTGCTAGGAGA
CCACGTTCCATTTTGACAACTAGTTCTATACTTCTATTAATAATATTTTC
AGTTCCTTGGTTTGTGTTTGAAGGAAATACGGTGTATCGTATTGGTCTG
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