EG358202

Overview
NameEG358202
Unique NameEG358202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358202_ssr365 microsatellite EG358202_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358202_ssr73 microsatellite EG358202_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:330..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.221e-27
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            ++SRTV ++++LD  I+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T+V +  GL
Sbjct:  452 KHSRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNSTSVAYVEGL 542          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.513e-27
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +K+F+D L++PAGW++W  DFAL TLYY EYMN GPGS+  NRV+W G+  + +  + SQF+VG FI GN WL +T +PFT  L
Sbjct:  429 YSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.228e-26
Identity = 53/93 (56.99%), Postives = 68/93 (73.12%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEW--SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            ++SRTV ++T+LD++++P GW  W     F L+TL+YAEY NTGP SST  RV W+G+HVL   S  S FTVG FIAG +WLP T +PFTSGL
Sbjct:  444 KFSRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFTVGKFIAGTAWLPRTGIPFTSGL 536          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.228e-26
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV+I+  +  ++ P GW+EW+ DFAL+TL+Y E+MN GPGS  ++RVKW GYHV  +  Q + FTV  FI GN WLP+T V F+ GL
Sbjct:  434 YSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 523          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.604e-26
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEW--SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSR   +KT++D+ I+P GW  W    +FALNT++Y EY N GPGSST  RV+W+G+H +TS +  S+FTVG+ IAG SWLPAT VPF SGL
Sbjct:  503 YSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGSWLPATGVPFKSGL 594          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.095e-26
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV++++++D ++ P GW EW+GDFAL+TLYYAEY NTG GSST +RV W GYHV+ S +  + FTV NF+ G+ W+  + VP+ SGL
Sbjct:  483 YSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFTVENFLLGDGWMVQSGVPYISGL 571          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.573e-26
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSR VY+ + +   I+P GW+EW+G FAL++LYY EYMN G GS    RVKW GYHV+TS  + S+FTV  FI+G+SWLP+T V F SGL
Sbjct:  496 YSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.667e-26
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++ + ++INPAGW  W G+FAL+TLYY EY NTG G++T+ RV W+G+ V+TS ++   FT G+FIAG SWL AT  PF+ GL
Sbjct:  230 YSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.667e-26
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTVY+++++D  + P GW EW+GDFAL+TLYYAEY NTGPGS+T NRV W GYHV+ S +  + FTV        W+  T VP+TSGL
Sbjct:  489 YSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINS-TDAANFTVTGLFIEADWIWKTGVPYTSGL 577          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.667e-26
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTVY+ T++  L+ P GW+EW G+FAL+TL+Y EY N GPG  ++ RVKW GYH++   + +S FTVG+FI G  WLPAT V FT+GL
Sbjct:  453 YSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRSSGRVKWPGYHIMDKRTALS-FTVGSFIDGRRWLPATGVTFTAGL 541          
The following BLAST results are available for this feature:
BLAST of EG358202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PME3_SOLLC4.221e-2754.95Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME40_ARATH5.513e-2756.67Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME59_ARATH1.228e-2656.99Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME44_ARATH1.228e-2654.44Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME33_ARATH1.604e-2657.61Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME41_ARATH2.095e-2655.56Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME61_ARATH3.573e-2657.78Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_DAUCA4.667e-2655.56Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME7_ARATH4.667e-2656.67Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME22_ARATH4.667e-2656.67Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank description4c3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358202 ID=EG358202; Name=EG358202; organism=Citrus sinensis; type=EST; length=457bp
AGCGTGGTCGCGGCCGAGGTACTCGCGAACCGTTTACATCAAGACCTTCC
TTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGATTTT
GCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGGGTTC
TTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACCAGTC
CGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAATTCT
TGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTGATCA
TTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTTGAGG
TAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTACCAT
CTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTGTACCTGCCCGGGCGG
CCGCTCG
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