EG358202

Overview
NameEG358202
Unique NameEG358202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358202_ssr365 microsatellite EG358202_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358202_ssr73 microsatellite EG358202_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:330..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.095e-26
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +SRTV++K  L +L++PAGW+ WSG FAL+TLYY EY NTG G+S + RVKW GYHV+ + ++  +FTV NF+ GN W+ AT VP   GL
Sbjct:  465 HSRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTVENFLDGNYWITATGVPVNDGL 554          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.960e-26
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 283
            YSRTV +++FL ++I P GW+EW+GDFALN+L+Y EYMN GPG+   +RVKW GY V    +Q   +TV  FI GN WLP+T V +T+
Sbjct:  431 YSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKYTA 518          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.040e-25
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWS--GDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +KT++DS+++P GW  W+    + L+TL+YAEY N GP SST  RV+W+G+HVL+  S  S F+VG FIAG +WLP + +PFTS L
Sbjct:  449 YSRTVVLKTYIDSVVSPVGWSPWTKGSTYGLDTLFYAEYKNIGPASSTRWRVRWKGFHVLSKASDASAFSVGKFIAGTAWLPGSGIPFTSEL 540          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.040e-25
Identity = 49/90 (54.44%), Postives = 69/90 (76.67%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++ +  LI+PAGW EW G+FALNTL+Y E+ N+G G+ T+ RVKW+G+ V+TS ++   FT G+FIAG+SWL +T  PF+ GL
Sbjct:  495 YSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.358e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSG 286
            +YSRTV IK+F+D LI+PAGW+E   DFAL TLYY EYMN GPG++ A RV W G+  + + ++ +QFTVG FI G++WL +T +PF+ G
Sbjct:  442 KYSRTVIIKSFIDDLIHPAGWLEGKKDFALETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGSTWLNSTGIPFSLG 531          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.025e-25
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 283
            +S TV +K+F+D  INP GW+ W+GD A +T++YAEY+N+GPG+ST NRVKW+G     +  + ++FTV  FI GN+WLPAT VPF S
Sbjct:  475 FSTTVIMKSFMDKFINPKGWLPWTGDTAPDTIFYAEYLNSGPGASTKNRVKWQGLKTSLTKKEANKFTVKPFIDGNNWLPATKVPFNS 562          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.025e-25
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++ +  +I+PAGW EW G+FALNTL+Y E+ N G G+ T+ RVKW+G+ V+TS ++   FT G+FIAG+SWL +T  PF+ GL
Sbjct:  495 YSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.025e-25
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +YSRTV +++F+D  I+P+GW  WS +FAL TLYY E+ N+GPGSS + RV W GYH   + ++   FTV  FI GNSWLP+T V F SGL
Sbjct:  438 QYSRTVVMQSFIDGSIHPSGWSPWSSNFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPSTGVVFDSGL 528          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.739e-25
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++ +  +I PAGW EW+G+FAL+TL+Y EY NTG G+ T+ RVKW+G+ V+TS ++   +T G FIAG SWL +T  PF+ GL
Sbjct:  494 YSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.501e-24
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YS+TV +++ +  +I P GW EW+G FALNTL Y EY NTG G+ TANRVKWRG+ V+T+ ++  ++T G FI G  WL +T  PF+ GL
Sbjct:  503 YSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
The following BLAST results are available for this feature:
BLAST of EG358202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PME6_ARATH6.095e-2655.56Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_PRUPE7.960e-2654.55Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME60_ARATH1.040e-2554.35Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME1_CITSI1.040e-2554.44Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME39_ARATH1.358e-2555.56Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME46_ARATH3.025e-2554.55Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME3_CITSI3.025e-2553.33Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME35_ARATH3.025e-2554.95Probable pectinesterase/pectinesterase inhibitor 3... [more]
PMEU1_SOLLC6.739e-2553.33Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_ARATH1.501e-2452.22Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank description4c3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358202 ID=EG358202; Name=EG358202; organism=Citrus sinensis; type=EST; length=457bp
AGCGTGGTCGCGGCCGAGGTACTCGCGAACCGTTTACATCAAGACCTTCC
TTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGATTTT
GCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGGGTTC
TTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACCAGTC
CGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAATTCT
TGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTGATCA
TTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTTGAGG
TAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTACCAT
CTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTGTACCTGCCCGGGCGG
CCGCTCG
back to top