EG358202

Overview
NameEG358202
Unique NameEG358202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358202_ssr365 microsatellite EG358202_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358202_ssr73 microsatellite EG358202_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:330..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.650e-21
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRT+ + TF+   + P GW  W GDF L TL+Y+E  NTGPGS+ ANRV W G   L S   + +FT   +I G+ W+P   VP+T+GL
Sbjct:  477 YSRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPGSALANRVTWAGIKTL-SEEDILKFTPAQYIQGDDWIPGKGVPYTTGL 565          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +S    +++F+  L++PAGW  W G+  L+TL+Y EY N GPG+ T+ RVKW G+ V+  P Q ++FTV   + G +WL  T +P+ SGL
Sbjct:  435 FSTVAVMQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKETRIPYESGL 524          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.007e-20
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            R+S    +++F+  L++PAGW  W G+  L+TL+Y EY N GPG+ T+ RVKW G+ V+  P + ++FTV   + G +WL  + +P+ SGL
Sbjct:  407 RFSTVAVLQSFIGDLVDPAGWTPWKGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFTVAKLLDGETWLKESRIPYESGL 497          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +S    +++F+  L++PAGW  W G+  L+TL+Y EY N GPG+ T+ RVKW G+ V+  P Q ++FTV   + G +WL  + +P+ SGL
Sbjct:  435 FSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKESRIPYKSGL 524          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.480e-19
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 283
            +SRT+ + T +D +I+P GW++W+  FALNTL+Y EY N G GS    RV+WRG   + S     +F  GNF+ GN+W+P T +P+ +
Sbjct:  614 FSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRI-SDRAAREFAPGNFLRGNTWIPQTRIPYNA 700          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.231e-19
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +SRTV +++++D  I+ +GW +W+G  AL+TLYY EY N GPGS T  RV W G+H++        FT   FI G+ WL +T+ P+ +G+
Sbjct:  459 FSRTVVMESYIDEFIDGSGWSKWNGGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIM-GYEDAFNFTATEFITGDGWLGSTSFPYDNGI 547          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.425e-19
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRT+ + TF+   + P GW  W G+F LNTL+Y+E  NTGPG++   RV W G   L S  ++ +FT   +I G++W+P   VP+  GL
Sbjct:  474 YSRTIIMNTFIPDFVPPEGWQPWLGEFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKL-SDEEILKFTPAQYIQGDAWIPGKGVPYILGL 562          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.755e-17
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPAT 265
            +SRTV++   L+SLI+P GWM W+GDFAL TLYY EY NTGPGS  ++RV W           V  ++V NFI  + W   T
Sbjct:  523 FSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSSE---IPEKHVDVYSVANFIQADEWASTT 601          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.468e-16
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSG-DFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +SRTV +++ ++ +I+P GW+ W   DFA++TL YAEY N GP  +TA RVKW G+ VL +  +  +FTVG F+ G  W+ A   P   GL
Sbjct:  518 HSRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFRVL-NKEEAMKFTVGPFLQG-EWIQAIGSPVKLGL 606          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSW 253
            YSRTV+I   L++LI P GW+ WSGDFAL TLYY E  NTGPGS  + RV W           V  ++V NFI  + W
Sbjct:  472 YSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ---IPDEHVHVYSVANFIQADEW 546          
The following BLAST results are available for this feature:
BLAST of EG358202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PME21_ARATH2.650e-2147.78Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME19_ARATH5.904e-2143.33Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME30_ARATH1.007e-2041.76Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME42_ARATH1.315e-2042.22Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME43_ARATH2.480e-1944.32Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME12_ARATH4.231e-1943.33Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME28_ARATH9.425e-1943.33Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME64_ARATH6.755e-1748.78Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME45_ARATH7.468e-1645.05Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME51_ARATH1.274e-1550.00Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank description4c3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358202 ID=EG358202; Name=EG358202; organism=Citrus sinensis; type=EST; length=457bp
AGCGTGGTCGCGGCCGAGGTACTCGCGAACCGTTTACATCAAGACCTTCC
TTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGATTTT
GCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGGGTTC
TTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACCAGTC
CGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAATTCT
TGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTGATCA
TTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTTGAGG
TAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTACCAT
CTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTGTACCTGCCCGGGCGG
CCGCTCG
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