EG358202

Overview
NameEG358202
Unique NameEG358202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358202_ssr365 microsatellite EG358202_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358202_ssr73 microsatellite EG358202_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:330..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFAL-NTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +S TV +++ + +L+NP GWM W  +     T++YAEY N+GPG+  + RVKW GY    +     +FTV +FI G  WLP   V F S L
Sbjct:  491 FSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQFDSTL 581          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEW-SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNV 271
            +S TV ++T + +++ P+GWM W SG     ++ Y EY NTGPGS    RVKW GY  + S ++ ++FTV   + G  W+PAT V
Sbjct:  497 FSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGV 581          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.664e-15
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSG-DFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRT+ +++ ++++I+P GW+ W   DFA++TLYYAEY N G    T +RVKW G+ V+ +  +   +TVG F+ G+ W+ A+  P   GL
Sbjct:  523 YSRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQGD-WISASGSPVKLGL 611          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDF--ALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAG-NSWLP 259
            +S+TV +++ + S +NPAGW+ W+  +     T++Y EY N+GPGS  + RVKW GY  ++S  + ++FTV  F+ G ++W+P
Sbjct:  877 FSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWIP 959          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWS-GDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGN-SWLPATNVPFTSGL 289
            YSRT+ +++++D  I P GW  W+  +F  +T YYAEY N GPG++   R+ W+G+    +     +FT G +I  + +WL   NVP+ +G+
Sbjct:  280 YSRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAGM 371          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            ++S TV I + +  +I P GW  W G+    +  Y EY N GPG+ T  RV W    +  S ++V+ FTV N++   +W+   NVP T GL
Sbjct:  507 KFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            ++ T  I T +  LI P GW EW G+    T  Y E+ N GPG++TA RV W    +  S ++V +FTV N++   +W+   NVP   GL
Sbjct:  497 FATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +++ TV I T +  LI P GW EW G+    T  Y E+ N GPG++T  R  W    V  S ++V  +TV N++   +W+   NVP   GL
Sbjct:  500 KFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            ++S TV + T +  LI P GW  W G+    +  Y EY N GPG+    RV W    V  S ++V+ FT  N++   +W+   NVP T GL
Sbjct:  500 KFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQ-----FTVGNFIAGNSWLPATNVPFTSG 286
            +YS+ V + + +D++  P G+M W G     T  Y EY N GPG+ T  RVKW G  VLTS           F + N  A ++W+  + VP++ G
Sbjct:  351 QYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
The following BLAST results are available for this feature:
BLAST of EG358202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PME3_PHAVU1.274e-1541.76Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME1_ARATH1.274e-1542.35Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME13_ARATH1.664e-1541.76Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME26_ARATH1.078e-1439.76Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME_PETIN1.408e-1436.96Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME5_ARATH2.249e-1237.36Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_BRANA2.937e-1238.89Probable pectinesterase/pectinesterase inhibitor O... [more]
PME37_ARATH3.835e-1237.36Probable pectinesterase/pectinesterase inhibitor V... [more]
PME4_ARATH1.116e-1137.36Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_MEDSA7.233e-1135.79Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]

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Properties
Property NameValue
Genbank description4c3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358202 ID=EG358202; Name=EG358202; organism=Citrus sinensis; type=EST; length=457bp
AGCGTGGTCGCGGCCGAGGTACTCGCGAACCGTTTACATCAAGACCTTCC
TTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGATTTT
GCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGGGTTC
TTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACCAGTC
CGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAATTCT
TGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTGATCA
TTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTTGAGG
TAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTACCAT
CTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTGTACCTGCCCGGGCGG
CCGCTCG
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