FC921862

Overview
NameFC921862
Unique NameFC921862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   +KYE AR+LK  +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTVGC
Sbjct:  488 SSRIKGEKDWQKYETARRLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGC 560          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   +KYE AR+LK  +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTVGC
Sbjct:  434 SSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGC 506          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   +KYE AR+LK  +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTVGC
Sbjct:  434 SSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGC 506          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   +KYE AR+LK  +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTVGC
Sbjct:  432 SSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGC 504          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   +KYE AR+LK  +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTVGC
Sbjct:  434 SSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGC 506          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1M_RAT (DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS  KG+   +KYE AR+LK  +  IRA Y  D+ S +  +RQ+AVA Y IDKLALR GNEK++ E ADTVGC
Sbjct:  261 SSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGC 333          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1M_MOUSE (DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.324e-14
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS  KG+   +KYE AR+LK  +  IRA Y  D+ S +  +RQ+AVA Y IDKLALR GNEK++ E ADTVGC
Sbjct:  261 SSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGC 333          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   +KYE AR+LK  +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTV C
Sbjct:  434 SSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVSC 506          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_USTMA (DNA topoisomerase 1 OS=Ustilago maydis GN=TOP1 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   10 ASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVG 225
            A+S  K  S REK+EKARKL   +  IR    K+  S+    RQIA   +LID  +LRAGNEK +DEA+T G
Sbjct:  385 ATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQIATIVWLIDNFSLRAGNEKGEDEAETYG 456          
The following BLAST results are available for this feature:
BLAST of FC921862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TOP1_XENLA7.324e-1456.16DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2... [more]
TOP1_RAT7.324e-1456.16DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 P... [more]
TOP1_MOUSE7.324e-1456.16DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 S... [more]
TOP1_HUMAN7.324e-1456.16DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 S... [more]
TOP1_CERAE7.324e-1456.16DNA topoisomerase 1 OS=Cercopithecus aethiops GN=T... [more]
TOP1M_RAT7.324e-1456.16DNA topoisomerase I, mitochondrial OS=Rattus norve... [more]
TOP1M_MOUSE7.324e-1456.16DNA topoisomerase I, mitochondrial OS=Mus musculus... [more]
TOP1_CRIGR3.635e-1354.79DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 ... [more]
TOP1_USTMA3.402e-1150.00DNA topoisomerase 1 OS=Ustilago maydis GN=TOP1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06053C06T7 RindPdigS Citrus sinensis cDNA clone C06053C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921862 ID=FC921862; Name=FC921862; organism=Citrus sinensis; type=EST; length=229bp
CGCGGGGCGGCTAGTAGTTTCTTGAAGGGGCAAAGTGGCAGAGAGAAATA
TGAGAAAGCAAGAAAGCTAAAGGATTACATACATAGCATCAGAGCAGCTT
ACACAAAAGATTTTGTCAGTAGAGATGGAACAAGGAGACAAATAGCTGTT
GCAACCTATCTGATTGACAAACTAGCTCTTAGGGCGGGTAATGAGAAGGA
TGATGATGAAGCTGATACCGTTGGTTGCT
back to top