EG358201

Overview
NameEG358201
Unique NameEG358201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5394 contig Csv1_Contig5394:1..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG358201 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 2 
Query:    2 RKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGFYDSDID---------AEEIFRNFFFGG 262
            +K+YRKLS K HPD NK P A E FK + +A++ LS+D+ R  YD  G  +P           +GF GF   D D          ++IF  FF GG
Sbjct:   22 KKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADP----------NQGFGGFRSDDFDFGGFSGFSGFDDIFSTFFGGG 107
[Close]
BLAST of EG358201 vs. ExPASy Swiss-Prot
Match: DNAJ_CAMLR (Chaperone protein dnaJ OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2 
Query:    2 RKSYRKLSLKVHPDKNKAPG-AEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAARGFNGFYDSDIDAEEIFRNFFFGG 262
            +K+YRK++LK HPD+N+    AEE FK V++A++ LSNDE R  YD  G +    Q       A GF GF   D+D  +IF +FF  G
Sbjct:   21 KKAYRKMALKYHPDRNQGDKEAEEKFKLVNEAYEVLSNDEKRSIYDRYGKEGLKGQ-------AGGFGGF--GDVDLGDIFSSFFGDG 99
The following BLAST results are available for this feature:
BLAST of EG358201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DNAJ_BACTR4.335e-1139.58Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]
DNAJ_CAMLR9.657e-1144.32Chaperone protein dnaJ OS=Campylobacter lari (stra... [more]

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Properties
Property NameValue
Genbank description6h4 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0006h4, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358201 ID=EG358201; Name=EG358201; organism=Citrus sinensis; type=EST; length=460bp
ACGGAAATCTTATAGAAAATTATCGCTGAAGGTTCATCCCGATAAGAACA
AAGCTCCAGGCGCCGAAGAAGCCTTTAAAGCGGTATCAAAGGCGTTTCAG
TGTTTGAGCAACGATGAGAGTCGGAAAAAATATGATATTACTGGGTCAGA
TGAGCCCGTTTATCAGCCACGGACTCATACTCGGGCCGCCCGTGGGTTTA
ACGGGTTTTATGATTCGGATATTGATGCTGAGGAGATTTTTAGGAACTTT
TTCTTCGGGGGAATGCCGCCAGCCAGGACTCAGTTTCGGCATTTTAATTT
CGGGCAGGGAGTGGCCACGGGAACGGCTGATCGTAATGGCTCCGATGGGT
TTAATTTACGTGCCTTGATTCAGTTGTTGCCTGTGATTTTGATAATTCTC
TTGCAGTTTTTGCCGTCTTCTGATCCAATTTATGCCTTGTCGAGGTCTTA
CCCTTATGAG
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